Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LCP48_RS05880 Genome accession   NZ_CP084108
Coordinates   1251204..1252268 (+) Length   354 a.a.
NCBI ID   WP_004224934.1    Uniprot ID   A0A2X0ZBS5
Organism   Lysinibacillus capsici strain anQ-h6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1246204..1257268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCP48_RS05855 - 1246940..1247197 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  LCP48_RS05860 - 1247414..1248199 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  LCP48_RS05865 - 1248216..1249139 (+) 924 WP_225340773.1 RodZ family helix-turn-helix domain-containing protein -
  LCP48_RS05870 pgsA 1249187..1249765 (+) 579 WP_004224936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LCP48_RS05875 cinA 1249783..1251042 (+) 1260 WP_004224935.1 competence/damage-inducible protein A Machinery gene
  LCP48_RS05880 recA 1251204..1252268 (+) 1065 WP_004224934.1 recombinase RecA Machinery gene
  LCP48_RS05885 rny 1252784..1254343 (+) 1560 WP_004224930.1 ribonuclease Y -
  LCP48_RS05890 - 1254572..1255300 (+) 729 WP_225340774.1 YveK family protein -
  LCP48_RS05895 - 1255300..1256001 (+) 702 WP_004224927.1 CpsD/CapB family tyrosine-protein kinase -
  LCP48_RS05900 - 1256042..1256797 (+) 756 WP_318528174.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38105.23 Da        Isoelectric Point: 4.6371

>NTDB_id=609614 LCP48_RS05880 WP_004224934.1 1251204..1252268(+) (recA) [Lysinibacillus capsici strain anQ-h6]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENTAVLEDIANK
IRASYGIAASSYTIAAHDDEEEMDEELMLLLEEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=609614 LCP48_RS05880 WP_004224934.1 1251204..1252268(+) (recA) [Lysinibacillus capsici strain anQ-h6]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTCTAAAACAAATTGAGAAGAATTTTGGTAAAGGTTCCATCATGAAACT
TGGTGAAAAAACCGATTTAGAAATTGCAACATCTTCAAGTGGGTCACTAGCACTTGATGCTGCATTAGGAGTGGGTGGAT
ATCCACGTGGACGTATTATTGAAGTATACGGTCCCGAATCGTCTGGTAAAACAACAGTTGCTCTACATGCCATTGCTGAA
GTACAGGCATCAGGTGGACAAGCAGCATTTATCGATGCGGAGCATGCATTAGATCCAATCTATGCTCAAAAATTAGGTGT
GAATATTGATGAGCTATTATTATCACAGCCCGACACAGGTGAGCAAGCACTTGAAATTGCAGAAGCATTAGTGCGTAGTG
GAGCTATTGATATTATCGTTATTGACTCGGTTGCTGCCTTAGTGCCAAAAGCAGAAATTGAAGGGGATATGGGTGACTCT
CATGTCGGCTTACAAGCTCGTCTAATGTCTCAAGCTTTACGTAAACTTTCAGGTGCGATTAATAAATCAAAAACGATTGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTCATGTTTGGTAATCCAGAAACAACACCAGGTGGACGTGCGCTTA
AATTCTACAGCTCTGTCCGTTTAGAAGTGCGTCGTGCAGAAGCTATTAAGCAAGGTAATGATATTGTTGGTAACCGTACT
AAAATTAAAATTGTAAAAAATAAAGTAGCACCACCTTTCCGTACAGCTGAAGTAGATATTATGTATGGAGAAGGGATTTC
TAAAGAAGGCGAGACAGTCGATTTAGGCGTGGAATTAGACATTGTGCAAAAAAGCGGTTCTTGGTATGCATATGGCGATG
AGCGCTTAGGTCAAGGACGAGAAAATGCTAAACAGTATTTAAAAGAAAATACTGCTGTCCTAGAAGACATAGCAAATAAA
ATCCGAGCTTCTTATGGTATTGCGGCTTCTTCTTATACAATTGCTGCCCATGATGATGAAGAAGAGATGGATGAAGAATT
AATGTTACTTCTGGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0ZBS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.373

0.799
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

92.09

0.698
  recA Streptococcus mitis SK321

63.989

100

0.653
  recA Streptococcus mitis NCTC 12261

63.712

100

0.65
  recA Streptococcus mutans UA159

63.056

100

0.641
  recA Streptococcus pneumoniae R6

65.23

98.305

0.641
  recA Streptococcus pneumoniae Rx1

65.23

98.305

0.641
  recA Streptococcus pneumoniae D39

65.23

98.305

0.641
  recA Streptococcus pneumoniae TIGR4

65.23

98.305

0.641
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.22

0.621
  recA Streptococcus pyogenes NZ131

67.073

92.655

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.35

92.938

0.607
  recA Neisseria gonorrhoeae MS11

65.35

92.938

0.607
  recA Neisseria gonorrhoeae MS11

65.35

92.938

0.607
  recA Acinetobacter baylyi ADP1

62.099

96.893

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

96.045

0.593
  recA Helicobacter pylori strain NCTC11637

64.615

91.808

0.593
  recA Ralstonia pseudosolanacearum GMI1000

63.72

92.655

0.59
  recA Helicobacter pylori 26695

64.308

91.808

0.59
  recA Glaesserella parasuis strain SC1401

60.756

97.175

0.59
  recA Acinetobacter baumannii D1279779

61.062

95.763

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.19

92.09

0.582
  recA Vibrio cholerae strain A1552

63.75

90.395

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.395

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571
  recA Pseudomonas stutzeri DSM 10701

62.928

90.678

0.571