Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LCP48_RS05875 Genome accession   NZ_CP084108
Coordinates   1249783..1251042 (+) Length   419 a.a.
NCBI ID   WP_004224935.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain anQ-h6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1244783..1256042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCP48_RS05845 yfmH 1244868..1246169 (+) 1302 WP_004224941.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LCP48_RS05850 ymfI 1246166..1246894 (+) 729 WP_004224940.1 elongation factor P 5-aminopentanone reductase -
  LCP48_RS05855 - 1246940..1247197 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  LCP48_RS05860 - 1247414..1248199 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  LCP48_RS05865 - 1248216..1249139 (+) 924 WP_225340773.1 RodZ family helix-turn-helix domain-containing protein -
  LCP48_RS05870 pgsA 1249187..1249765 (+) 579 WP_004224936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LCP48_RS05875 cinA 1249783..1251042 (+) 1260 WP_004224935.1 competence/damage-inducible protein A Machinery gene
  LCP48_RS05880 recA 1251204..1252268 (+) 1065 WP_004224934.1 recombinase RecA Machinery gene
  LCP48_RS05885 rny 1252784..1254343 (+) 1560 WP_004224930.1 ribonuclease Y -
  LCP48_RS05890 - 1254572..1255300 (+) 729 WP_225340774.1 YveK family protein -
  LCP48_RS05895 - 1255300..1256001 (+) 702 WP_004224927.1 CpsD/CapB family tyrosine-protein kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45335.77 Da        Isoelectric Point: 4.8349

>NTDB_id=609613 LCP48_RS05875 WP_004224935.1 1249783..1251042(+) (cinA) [Lysinibacillus capsici strain anQ-h6]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYMLLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQNILDAQTNPTVAPLASDGEVTLRVTAKAATEQQARQLIKAKV
AEIQALVGDYQYGIDDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLGISQE
LIDTHGVVSAECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=609613 LCP48_RS05875 WP_004224935.1 1249783..1251042(+) (cinA) [Lysinibacillus capsici strain anQ-h6]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACAAATACAAATGCGAGATTTATCTCAAG
CCAGCTATCCGAGCTTGGCATCAACGTTTTTTATCATACCGTAGTAGGCGATAATGCAAAGCGATTAGAACAAGCGATCG
AAGTGGCAGAGTCTCGTGCAGATCTCATTATTTTTTCGGGAGGACTTGGTCCAACAAAAGATGATTTAACGAAGGAAACG
ATTGCACGTCATCTTGGTGTTTCTCTTGAGTTTGATGAAGTAGCATTGACGTATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAAAATAACCGTAAACAGGCATTAATTTTAGCTGGGAGTGAAGTATTAGCTAATCACCATGGAATGG
CTCCAGGTATGATCTTCACAAAAAATGATCGCACTTATATGTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTTGCTGCGATGCTTAATGATGGAGGGATCATTGCATCACATGTTATGCGATTTTATGG
AATTGGTGAGGCCGAGCTTGAAGTACAAGTTCAAAATATTTTAGATGCACAAACCAATCCAACAGTTGCTCCACTTGCTT
CTGATGGTGAGGTAACGTTACGCGTAACAGCTAAAGCAGCAACAGAGCAGCAAGCTAGGCAGCTTATTAAGGCAAAGGTT
GCAGAAATCCAAGCCCTTGTTGGTGATTATCAATATGGTATAGATGATGATTCCCTTGCCTCAAAAACGGTAGAAATGCT
ACTGGATAATGAGCTAACAATTGCGGCTGCAGAAAGTTTAACTGCTGGTTTATTTCAATCTGAGCTTGCGGAAATTCCTG
GGGTAGGCAATGCGCTTATAGGAGGCGTTGTTACCTATGCAGCAGATGCGAAAGTAAAACAGCTAGGCATTTCACAAGAA
TTAATTGATACACATGGTGTTGTGAGTGCTGAATGTGCAGCGGCAATGGCAAGTGCTGTTCGTGAGAAATTTGCTACAAA
TATTGGGATTGGCCTTACAGGAGAAGCAGGTCCCACTGCGCATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CCATAAATGATGAGGAGCCGCTTACATATTTACTTCATTTATCAGGCATGCGTAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGCCATTATTTAATGCAGCTTTTAGAAGAACGTGGCTACACAAAACGTTATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.427

98.329

0.516
  cinA Streptococcus mitis SK321

45.17

91.408

0.413
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408
  cinA Streptococcus mitis NCTC 12261

44.386

91.408

0.406
  cinA Streptococcus mutans UA159

44.063

90.453

0.399