Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K6974_RS00430 Genome accession   NZ_CP082204
Coordinates   73258..74409 (+) Length   383 a.a.
NCBI ID   WP_222337356.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68258..79409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS00405 (K6974_00395) - 69141..69506 (+) 366 WP_222337360.1 helix-turn-helix domain-containing protein -
  K6974_RS00410 (K6974_00400) - 69521..70168 (+) 648 WP_222337359.1 CPBP family intramembrane glutamic endopeptidase -
  K6974_RS00415 (K6974_00405) ruvA 70246..70836 (+) 591 WP_053863613.1 Holliday junction branch migration protein RuvA -
  K6974_RS00420 (K6974_00410) - 71419..71988 (+) 570 WP_222337358.1 DNA-3-methyladenine glycosylase I -
  K6974_RS00425 (K6974_00415) cinA 72025..73206 (+) 1182 WP_222337357.1 competence/damage-inducible protein A Machinery gene
  K6974_RS00430 (K6974_00420) recA 73258..74409 (+) 1152 WP_222337356.1 recombinase RecA Machinery gene
  K6974_RS00435 (K6974_00425) - 74605..76359 (-) 1755 WP_392338942.1 IS1634 family transposase -
  K6974_RS00440 (K6974_00430) spx 76633..77031 (+) 399 WP_004195475.1 transcriptional regulator Spx -
  K6974_RS00445 (K6974_00435) - 77172..78628 (+) 1457 Protein_68 IS1182 family transposase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40988.77 Da        Isoelectric Point: 4.8974

>NTDB_id=599963 K6974_RS00430 WP_222337356.1 73258..74409(+) (recA) [Streptococcus suis strain FJSM5]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEVVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRIHYGLIEGEEAPEVVTEETPVATEEIQDVILDLDGGIELEE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=599963 K6974_RS00430 WP_222337356.1 73258..74409(+) (recA) [Streptococcus suis strain FJSM5]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGTTTGTCAATCGACATTGCGCTTGGAGCAGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTATGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAAAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCGGAACACGCCTTGGATCCAGCCTATGCAGCAGCGCTTGGTGTTAACATTGACGAGTTGCTCTTGTCACAGCCGG
ATTCAGGGGAGCAAGGTCTTGAAATTGCAGGCAAGCTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCTCGTGCAGAAATCGACGGTGATATTGGTGATAGTCATGTTGGTTTGCAGGCTCGTATGATGAGTCA
GGCCATGCGCAAACTCGGAGCATCCATCAACAAAACTAAGACAGTAGCTATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCCGAAACAACACCTGGTGGTCGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAATACACAAATCAAAGGAACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCTCCTCCGTTTAAAGAGGTTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCCAAGAAATTCCTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATTCGTATTCATTATGGATT
GATTGAAGGTGAGGAAGCACCAGAAGTCGTGACAGAGGAAACCCCTGTTGCAACTGAAGAAATCCAAGATGTTATTTTAG
ACTTGGATGGTGGCATCGAATTAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

84.635

100

0.849
  recA Streptococcus pyogenes NZ131

84.595

100

0.846
  recA Streptococcus pneumoniae R6

83.42

100

0.841
  recA Streptococcus pneumoniae Rx1

83.42

100

0.841
  recA Streptococcus pneumoniae D39

83.42

100

0.841
  recA Streptococcus pneumoniae TIGR4

83.42

100

0.841
  recA Streptococcus mitis NCTC 12261

83.508

99.739

0.833
  recA Streptococcus mitis SK321

83.246

99.739

0.83
  recA Lactococcus lactis subsp. cremoris KW2

74.504

92.167

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

85.901

0.582
  recA Acinetobacter baumannii D1279779

59.829

91.645

0.548
  recA Neisseria gonorrhoeae MS11

61.934

86.423

0.535
  recA Neisseria gonorrhoeae MS11

61.934

86.423

0.535
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.423

0.535
  recA Pseudomonas stutzeri DSM 10701

56.941

92.167

0.525
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

85.901

0.522
  recA Acinetobacter baylyi ADP1

61.231

84.856

0.52
  recA Vibrio cholerae strain A1552

61.231

84.856

0.52
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.856

0.52
  recA Glaesserella parasuis strain SC1401

61.231

84.856

0.52
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

84.334

0.514
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.602

89.295

0.514
  recA Ralstonia pseudosolanacearum GMI1000

60.252

82.768

0.499
  recA Helicobacter pylori strain NCTC11637

57.975

85.117

0.493
  recA Helicobacter pylori 26695

57.975

85.117

0.493