Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K6972_RS00410 Genome accession   NZ_CP082203
Coordinates   71505..72656 (+) Length   383 a.a.
NCBI ID   WP_105118957.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66505..77656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS00395 (K6972_00395) ruvA 68257..68847 (+) 591 WP_105179973.1 Holliday junction branch migration protein RuvA -
  K6972_RS00400 (K6972_00400) - 69666..70235 (+) 570 WP_105179974.1 DNA-3-methyladenine glycosylase I -
  K6972_RS00405 (K6972_00405) cinA 70272..71453 (+) 1182 WP_105179975.1 competence/damage-inducible protein A Machinery gene
  K6972_RS00410 (K6972_00410) recA 71505..72656 (+) 1152 WP_105118957.1 recombinase RecA Machinery gene
  K6972_RS00415 (K6972_00415) spx 72892..73290 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  K6972_RS00420 (K6972_00420) - 73390..73656 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  K6972_RS00425 (K6972_00425) ruvX 73656..74075 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  K6972_RS00430 (K6972_00430) - 74087..74407 (+) 321 WP_222812619.1 DUF1292 domain-containing protein -
  K6972_RS00435 (K6972_00435) - 74578..75156 (+) 579 WP_105179976.1 nucleotidyltransferase family protein -
  K6972_RS00440 (K6972_00440) rpsJ 75818..76126 (+) 309 WP_002939332.1 30S ribosomal protein S10 -
  K6972_RS00445 (K6972_00445) rplC 76339..76965 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  K6972_RS00450 (K6972_00450) rplD 76990..77613 (+) 624 WP_004195490.1 50S ribosomal protein L4 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40832.54 Da        Isoelectric Point: 4.8910

>NTDB_id=599910 K6972_RS00410 WP_105118957.1 71505..72656(+) (recA) [Streptococcus suis strain NJ3]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEEAPVAAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=599910 K6972_RS00410 WP_105118957.1 71505..72656(+) (recA) [Streptococcus suis strain NJ3]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGCTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGCTTATCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAGGGGCGTATCATTGAGATTTACGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAGAAAGATGGTGGTATTGCTGCCTTTAT
CGATGCGGAGCATGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTGCTCTTGTCACAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTGATTGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTT
GCAGCCCTTGTACCACGTGCAGAAATTGACGGTGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGTCA
GGCCATGCGTAAACTCGGTGCATCCATCAACAAAACAAAAACAGTAGCCATTTTCATTAACCAGTTGCGTGAAAAAGTTG
GTGTCATGTTTGGTAACCCTGAAACAACGCCAGGTGGACGTGCACTTAAATTCTATGCCTCTGTCCGTATGGATGTTCGT
GGAAACACGCAAATCAAAGGGACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAAAA
CAAGGTAGCGCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGTAACCTCGGTATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAGATTCGTGTTCATTATGGCTT
GATTGAAGCAGATGGAGTTGAAGAGGTTGCGACCGAAGAAGCTCCTGTTGCTGCGGAAGAGATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862
  recA Streptococcus pyogenes NZ131

85.117

100

0.851
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.508

99.739

0.833
  recA Streptococcus mitis SK321

82.723

99.739

0.825
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Pseudomonas stutzeri DSM 10701

57.224

92.167

0.527
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori 26695

57.879

86.162

0.499
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499