Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K5J94_RS02285 Genome accession   NZ_CP081502
Coordinates   436077..437216 (+) Length   379 a.a.
NCBI ID   WP_221913368.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 431077..442216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS02265 - 432240..433475 (+) 1236 WP_221913364.1 MFS transporter -
  K5J94_RS02270 ruvA 433468..434064 (+) 597 WP_159563867.1 Holliday junction branch migration protein RuvA -
  K5J94_RS02275 - 434077..434628 (+) 552 WP_159563868.1 DNA-3-methyladenine glycosylase I -
  K5J94_RS02280 cinA 434735..436006 (+) 1272 WP_221913366.1 competence/damage-inducible protein A Machinery gene
  K5J94_RS02285 recA 436077..437216 (+) 1140 WP_221913368.1 recombinase RecA Machinery gene
  K5J94_RS02290 spx 437865..438263 (+) 399 WP_159545866.1 transcriptional regulator Spx -
  K5J94_RS02295 - 438518..438787 (+) 270 WP_159546220.1 IreB family regulatory phosphoprotein -
  K5J94_RS02300 ruvX 438784..439203 (+) 420 WP_159546222.1 Holliday junction resolvase RuvX -
  K5J94_RS02305 - 439214..439525 (+) 312 WP_159546224.1 DUF1292 domain-containing protein -
  K5J94_RS02310 - 439720..441279 (+) 1560 WP_221913370.1 DUF2079 domain-containing protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40614.18 Da        Isoelectric Point: 4.8973

>NTDB_id=597044 K5J94_RS02285 WP_221913368.1 436077..437216(+) (recA) [Streptococcus halichoeri strain Shali_VAS-CPH]
MAKKGKKAEEISKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDMALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELIKIASDMDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPEVFDEIDRKVRVKAGLIDDDQTPSEAAAVPEETAAELVLDFDDSIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=597044 K5J94_RS02285 WP_221913368.1 436077..437216(+) (recA) [Streptococcus halichoeri strain Shali_VAS-CPH]
GTGGCAAAAAAAGGAAAAAAAGCTGAAGAAATCAGTAAAAAATTTGGCGATGAACGTCGCAAGGCACTAGATGATGCCCT
AAAAAACATTGAAAAAGATTTTGGTAAAGGTGCCGTGATGCGCCTAGGAGAGCGTGCCGAACAAAAAGTTCAGGTAATGA
GCTCAGGGAGTTTAGCACTAGATATGGCGCTTGGAGCAGGCGGCTACCCTAAGGGCCGGATTATTGAGATCTATGGACCG
GAATCTTCTGGGAAGACAACAGTCGCTTTGCATGCCGTCGCTCAAGCTCAAAAAGAAGGAGGCATTGCTGCTTTTATTGA
TGCTGAGCACGCCTTGGACCCAGCTTATGCTGCTGCTTTAGGAGTTAATATTGATGAGTTGCTACTGTCTCAACCCGATT
CTGGTGAACAGGGCTTAGAAATAGCTGGCAAGCTGATTGATTCTGGTGCCGTTGATTTGGTGGTAGTGGACTCAGTTGCT
GCGCTGGTTCCCCGGGCCGAAATTGACGGCGATATTGGTGATAGTCATGTCGGTTTGCAAGCTCGGATGATGAGTCAAGC
TATGCGCAAATTGTCTGCTTCTATTAACAAGACAAAGACTATTGCTATTTTTATCAACCAGTTACGTGAAAAAGTTGGGG
TTATGTTTGGTAACCCGGAAACAACGCCAGGTGGTCGCGCGCTTAAGTTCTACGCATCTGTGCGCCTAGATGTCCGTGGT
AATACTCAGATTAAGGGAACCGGTGACCAAAAAGATAGCAATATTGGTAAAGAAACAAAGATTAAAGTTGTAAAGAACAA
GGTAGCACCTCCGTTTAAGGTGGCAGAAGTGGAAATCATGTACGGAGAAGGCATCTCGCGTACAGGTGAACTCATCAAAA
TAGCTTCTGATATGGATATTATCCAAAAAGCTGGCGCATGGTTCTCTTACAATGGTGAAAAGATTGGTCAAGGTTCGGAG
AATGCAAAACGTTATTTAGCAGATCATCCTGAGGTTTTTGATGAGATTGATCGTAAAGTCCGTGTCAAAGCAGGTCTAAT
TGACGATGATCAAACGCCTAGTGAGGCAGCTGCTGTTCCTGAAGAAACAGCAGCTGAATTGGTGCTAGACTTTGATGACT
CCATTGAAATCGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

91.557

100

0.916
  recA Streptococcus mutans UA159

86.945

100

0.879
  recA Streptococcus pneumoniae D39

84.576

100

0.868
  recA Streptococcus pneumoniae R6

84.576

100

0.868
  recA Streptococcus pneumoniae TIGR4

84.576

100

0.868
  recA Streptococcus pneumoniae Rx1

84.576

100

0.868
  recA Streptococcus mitis NCTC 12261

85.564

100

0.86
  recA Streptococcus mitis SK321

85.302

100

0.858
  recA Lactococcus lactis subsp. cremoris KW2

77.778

92.612

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

69.653

91.293

0.636
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

86.807

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

87.335

0.544
  recA Neisseria gonorrhoeae strain FA1090

61.934

87.335

0.541
  recA Neisseria gonorrhoeae MS11

61.934

87.335

0.541
  recA Neisseria gonorrhoeae MS11

61.934

87.335

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

85.224

0.538
  recA Glaesserella parasuis strain SC1401

59.706

89.71

0.536
  recA Acinetobacter baylyi ADP1

59.882

89.446

0.536
  recA Acinetobacter baumannii D1279779

61.538

85.752

0.528
  recA Vibrio cholerae strain A1552

60.923

85.752

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

85.752

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.215

87.335

0.517
  recA Helicobacter pylori 26695

55.398

92.876

0.515
  recA Helicobacter pylori strain NCTC11637

55.398

92.876

0.515
  recA Ralstonia pseudosolanacearum GMI1000

57.784

88.127

0.509
  recA Pseudomonas stutzeri DSM 10701

58.41

86.28

0.504