Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K5J94_RS02280 Genome accession   NZ_CP081502
Coordinates   434735..436006 (+) Length   423 a.a.
NCBI ID   WP_221913366.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 429735..441006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS02260 mutL 430241..432229 (+) 1989 WP_159548324.1 DNA mismatch repair endonuclease MutL -
  K5J94_RS02265 - 432240..433475 (+) 1236 WP_221913364.1 MFS transporter -
  K5J94_RS02270 ruvA 433468..434064 (+) 597 WP_159563867.1 Holliday junction branch migration protein RuvA -
  K5J94_RS02275 - 434077..434628 (+) 552 WP_159563868.1 DNA-3-methyladenine glycosylase I -
  K5J94_RS02280 cinA 434735..436006 (+) 1272 WP_221913366.1 competence/damage-inducible protein A Machinery gene
  K5J94_RS02285 recA 436077..437216 (+) 1140 WP_221913368.1 recombinase RecA Machinery gene
  K5J94_RS02290 spx 437865..438263 (+) 399 WP_159545866.1 transcriptional regulator Spx -
  K5J94_RS02295 - 438518..438787 (+) 270 WP_159546220.1 IreB family regulatory phosphoprotein -
  K5J94_RS02300 ruvX 438784..439203 (+) 420 WP_159546222.1 Holliday junction resolvase RuvX -
  K5J94_RS02305 - 439214..439525 (+) 312 WP_159546224.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46063.88 Da        Isoelectric Point: 6.1854

>NTDB_id=597043 K5J94_RS02280 WP_221913366.1 434735..436006(+) (cinA) [Streptococcus halichoeri strain Shali_VAS-CPH]
MKAELIAVGTEILTGQIVNTNSQFLSEKMAELGIDVYFQTAVGDNQERLLQVIDLASKRSDLVILCGGLGPTEDDLTKQT
LAAYLQRPLVVDKQAHQKLDDFFAQRPKHHRTPNNERQAQLIKGAIPLQNDTGLAIGGFLELDQVTYVVLPGPPSELKPM
VNHHLIPLLSKDQSRLYSKVLRFFGIGESQLVTVLADLIEGQTDPTLAPYAKIGEVTLRLSTKASSEVQAQRRLADLERR
ILARKSLDGLPLSDFLYGYGEDNSLAAETFRLLKKKDKTITAAESLTAGLFQAKLAEFSGASEVFKGGFVTYSIEEKANM
LKLSLPDLKEHGVVSAYTSEQMALGAKRQVGADLSVALTGVAGPSMLEGQPAGTVFIAVASQDDVVVNKFLIGGKSRNEV
RYIATLHAFNMVRNALLSEDSLI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=597043 K5J94_RS02280 WP_221913366.1 434735..436006(+) (cinA) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGAAAGCTGAACTGATTGCAGTTGGTACGGAAATCTTAACAGGACAAATTGTGAATACTAATAGTCAATTTCTTTCTGA
AAAGATGGCTGAATTAGGTATAGATGTCTATTTTCAAACAGCTGTCGGTGATAACCAAGAACGCTTATTGCAGGTTATTG
ACCTGGCCAGTAAGCGGAGTGATTTAGTTATTTTATGTGGAGGGTTAGGTCCAACCGAGGATGATTTGACGAAACAAACT
CTTGCAGCTTATTTGCAGCGTCCTTTAGTAGTGGACAAGCAAGCCCATCAGAAATTAGATGACTTTTTTGCTCAACGGCC
TAAGCACCATAGAACCCCTAATAATGAACGTCAAGCCCAATTAATCAAAGGGGCTATCCCTTTGCAAAATGACACAGGTC
TAGCTATTGGTGGCTTTTTAGAGCTTGATCAGGTGACTTATGTGGTCTTACCTGGTCCACCAAGTGAATTGAAACCCATG
GTGAACCACCATCTTATTCCTTTACTAAGCAAGGATCAGTCGCGCCTTTATTCCAAAGTGCTACGTTTTTTTGGTATAGG
GGAGAGCCAACTGGTTACTGTTTTAGCGGATTTAATAGAGGGGCAAACTGACCCAACGCTTGCCCCCTATGCCAAGATTG
GTGAGGTCACTCTACGCTTGTCCACAAAGGCAAGCAGTGAAGTGCAGGCGCAACGCCGCTTGGCTGATCTGGAAAGACGC
ATATTAGCTCGTAAGAGTTTAGATGGCTTACCTTTGAGTGATTTTTTATATGGTTATGGAGAAGACAATAGTTTAGCAGC
AGAGACGTTTCGCCTCTTAAAGAAAAAAGATAAGACAATTACAGCGGCGGAGAGCTTAACTGCTGGTCTCTTTCAAGCAA
AATTGGCGGAGTTTTCGGGCGCATCAGAGGTGTTTAAAGGTGGCTTTGTCACCTACAGTATTGAAGAAAAGGCAAACATG
CTAAAGCTTTCGTTACCAGATCTCAAAGAGCATGGCGTGGTTAGCGCCTATACTTCTGAGCAAATGGCTCTAGGCGCAAA
ACGGCAAGTTGGTGCCGATTTGAGTGTTGCTCTAACAGGGGTAGCTGGTCCATCTATGCTAGAAGGTCAGCCTGCTGGTA
CAGTTTTCATTGCTGTTGCTAGTCAAGACGATGTAGTGGTCAATAAGTTTTTAATTGGCGGAAAAAGCCGAAATGAGGTA
AGATATATAGCAACACTACACGCCTTTAACATGGTCCGAAATGCTTTATTAAGTGAGGACAGTTTGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(263-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-244)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

67.376

100

0.674
  cinA Streptococcus mitis SK321

67.064

99.054

0.664
  cinA Streptococcus mitis NCTC 12261

66.826

99.054

0.662
  cinA Streptococcus pneumoniae TIGR4

65.632

99.054

0.65
  cinA Streptococcus pneumoniae Rx1

65.394

99.054

0.648
  cinA Streptococcus pneumoniae R6

65.394

99.054

0.648
  cinA Streptococcus pneumoniae D39

65.155

99.054

0.645
  cinA Streptococcus suis isolate S10

53.846

98.345

0.53
  cinA Bacillus subtilis subsp. subtilis str. 168

45.411

97.872

0.444