Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K5K96_RS00195 Genome accession   NZ_CP081472
Coordinates   31378..32427 (-) Length   349 a.a.
NCBI ID   WP_207027884.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 12B2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 26378..37427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K96_RS00175 (K5K96_00175) - 26656..27381 (-) 726 WP_227276310.1 ThuA domain-containing protein -
  K5K96_RS00180 (K5K96_00180) - 27451..28530 (-) 1080 WP_167799677.1 Gfo/Idh/MocA family protein -
  K5K96_RS00185 (K5K96_00185) - 28604..29485 (-) 882 WP_227276311.1 AraC family transcriptional regulator -
  K5K96_RS00190 (K5K96_00190) rny 29607..31160 (-) 1554 WP_086341214.1 ribonuclease Y -
  K5K96_RS00195 (K5K96_00195) recA 31378..32427 (-) 1050 WP_207027884.1 recombinase RecA Machinery gene
  K5K96_RS00200 (K5K96_00200) cinA 32516..33754 (-) 1239 WP_227276312.1 competence/damage-inducible protein A Machinery gene
  K5K96_RS00205 (K5K96_00205) sdaAB 33926..34585 (+) 660 WP_114289892.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  K5K96_RS00210 (K5K96_00210) sdaAA 34598..35467 (+) 870 WP_114289893.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  K5K96_RS00215 (K5K96_00215) - 35485..36024 (+) 540 WP_114289894.1 putative glycolipid-binding domain-containing protein -
  K5K96_RS00220 (K5K96_00220) - 36039..36269 (-) 231 WP_114289895.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37684.84 Da        Isoelectric Point: 4.6599

>NTDB_id=596687 K5K96_RS00195 WP_207027884.1 31378..32427(-) (recA) [Vagococcus fluvialis strain 12B2]
MSDNRKAALDAALKKIEKDFGKGSVMKLGEKVDTQISTVSSGSLALDSALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
SVQKQGGTAAFIDAEHALDPKYAQALGVNIDELLLSQPDTGEQGLNIAEALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNR
TKIKVVKNKVAPPFRIAEVDIMYGEGISQEGELLDMASDKDIVNKSGAWYSYNDEKIGQGRENSKKFLADNPDIMQEVYE
KVRMAYNMDGVILEEVEEDVEDLGLDLEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=596687 K5K96_RS00195 WP_207027884.1 31378..32427(-) (recA) [Vagococcus fluvialis strain 12B2]
ATGTCAGATAATCGTAAAGCAGCATTAGATGCAGCATTAAAGAAGATAGAAAAAGATTTTGGTAAAGGATCAGTAATGAA
GTTAGGTGAGAAAGTAGATACTCAAATTTCTACAGTTTCAAGTGGTTCTTTAGCTTTAGACTCAGCTTTAGGAGTTGGTG
GCTATCCTCGAGGTAGAATTATTGAAGTCTATGGACCAGAGAGTTCTGGTAAAACAACAGTCGCTTTACACGCTATTGCC
TCAGTTCAAAAACAAGGCGGAACAGCAGCGTTTATCGATGCTGAGCATGCCTTAGATCCTAAATATGCACAAGCTTTAGG
AGTAAATATTGATGAGTTACTATTATCTCAACCAGATACAGGTGAGCAAGGGTTAAACATTGCAGAAGCTTTAGTATCAA
GTGGTGCCATTGATATTGTAGTAGTTGACTCGGTAGCAGCTTTAGTACCACGTGCTGAGATTGATGGAGAGATGGGAGAC
AGCCACGTAGGGTTACAAGCTCGTTTAATGTCTCAAGCTCTAAGAAAATTATCAGGTACTATTAACAAAACTAAAACAAT
TGCGATTTTTATTAACCAAATCCGTGAAAAAGTTGGAGTTATGTTCGGTAACCCAGAAGTAACACCAGGTGGACGTGCAC
TTAAATTCTACGCAACAGTTCGTTTAGAAGTAAGACGTGCAGAGCAGTTAAAACAAGGTACAGACATTATTGGTAACCGT
ACTAAAATTAAAGTTGTTAAAAATAAAGTAGCTCCTCCGTTTAGAATTGCTGAAGTAGATATTATGTACGGAGAAGGTAT
CTCTCAAGAAGGAGAACTTCTTGACATGGCTTCAGATAAAGATATCGTTAATAAGAGTGGTGCTTGGTATTCTTATAACG
ATGAGAAAATTGGTCAAGGACGTGAAAATTCTAAGAAATTCTTAGCGGACAACCCTGATATCATGCAAGAGGTTTACGAG
AAAGTTCGTATGGCATACAATATGGATGGTGTTATTCTTGAAGAAGTAGAAGAAGACGTAGAAGATTTAGGATTAGATTT
AGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.138

95.702

0.777
  recA Bacillus subtilis subsp. subtilis str. 168

80.851

94.269

0.762
  recA Streptococcus mitis NCTC 12261

71.429

98.281

0.702
  recA Streptococcus pneumoniae Rx1

71.221

98.567

0.702
  recA Streptococcus pneumoniae D39

71.221

98.567

0.702
  recA Streptococcus pneumoniae R6

71.221

98.567

0.702
  recA Streptococcus pneumoniae TIGR4

71.221

98.567

0.702
  recA Streptococcus pyogenes NZ131

68.627

100

0.702
  recA Streptococcus mutans UA159

72.289

95.129

0.688
  recA Streptococcus mitis SK321

72.561

93.983

0.682
  recA Lactococcus lactis subsp. cremoris KW2

69.817

93.983

0.656
  recA Ralstonia pseudosolanacearum GMI1000

60.511

100

0.61
  recA Neisseria gonorrhoeae strain FA1090

61.404

97.994

0.602
  recA Neisseria gonorrhoeae MS11

61.404

97.994

0.602
  recA Neisseria gonorrhoeae MS11

61.404

97.994

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

95.415

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

93.983

0.593
  recA Acinetobacter baumannii D1279779

59.942

97.994

0.587
  recA Glaesserella parasuis strain SC1401

61.747

95.129

0.587
  recA Acinetobacter baylyi ADP1

63.158

92.55

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.422

92.264

0.576
  recA Helicobacter pylori 26695

58.14

98.567

0.573
  recA Helicobacter pylori strain NCTC11637

58.14

98.567

0.573
  recA Vibrio cholerae strain A1552

61.3

92.55

0.567
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

92.55

0.567
  recA Pseudomonas stutzeri DSM 10701

60.681

92.55

0.562