Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K5K96_RS00200 Genome accession   NZ_CP081472
Coordinates   32516..33754 (-) Length   412 a.a.
NCBI ID   WP_227276312.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 12B2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27516..38754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K96_RS00185 (K5K96_00185) - 28604..29485 (-) 882 WP_227276311.1 AraC family transcriptional regulator -
  K5K96_RS00190 (K5K96_00190) rny 29607..31160 (-) 1554 WP_086341214.1 ribonuclease Y -
  K5K96_RS00195 (K5K96_00195) recA 31378..32427 (-) 1050 WP_207027884.1 recombinase RecA Machinery gene
  K5K96_RS00200 (K5K96_00200) cinA 32516..33754 (-) 1239 WP_227276312.1 competence/damage-inducible protein A Machinery gene
  K5K96_RS00205 (K5K96_00205) sdaAB 33926..34585 (+) 660 WP_114289892.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  K5K96_RS00210 (K5K96_00210) sdaAA 34598..35467 (+) 870 WP_114289893.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  K5K96_RS00215 (K5K96_00215) - 35485..36024 (+) 540 WP_114289894.1 putative glycolipid-binding domain-containing protein -
  K5K96_RS00220 (K5K96_00220) - 36039..36269 (-) 231 WP_114289895.1 hypothetical protein -
  K5K96_RS00225 (K5K96_00225) nhaC 36310..37692 (-) 1383 WP_227276313.1 Na+/H+ antiporter NhaC -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45010.46 Da        Isoelectric Point: 4.6260

>NTDB_id=596688 K5K96_RS00200 WP_227276312.1 32516..33754(-) (cinA) [Vagococcus fluvialis strain 12B2]
MKAEIIAVGTEILLGEIVNTNAAFLSEYLSNLGFDLYHQQVVGDNEDRLLVCLEEASNRSDLVVVCGGLGPTEDDLTKQT
TAKFLHKEIRYDEEAMNRLEAYFANSNRGVTENNKRQALTIEGGTTLQNDAGLACGVLYQADSTSYLLLPGPPREMKAMA
EGITKKLLQELLPNDSKLVSRYLRYIGIGESKLAEDLHELITTQTNPTIATYAKTNEVMLRIAAKAKTEDAGQLMLDALE
EKINQKVGEFFYGYGENLSLEEVVVDLLKTRKETLSVVEGVSGGLCQGKLTDIKGSSEVFLGGMVTYSNKSKQQLLNLAG
VQSEEILIVGKEQAIKLAESIKKVMGTDYGLSIIGVAGPETVDNLPVGSIFIALATNEGTISYEVLINRERDYIKDGAVK
QALNLLRKKIIS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=596688 K5K96_RS00200 WP_227276312.1 32516..33754(-) (cinA) [Vagococcus fluvialis strain 12B2]
ATGAAAGCTGAAATAATTGCAGTTGGAACAGAAATTTTACTTGGCGAGATAGTTAATACGAATGCTGCTTTTCTATCTGA
GTATCTAAGTAATTTAGGCTTTGATTTGTACCATCAACAAGTAGTTGGAGACAATGAAGATAGATTATTAGTTTGTTTAG
AAGAAGCAAGTAACAGGTCGGATTTAGTAGTTGTATGCGGTGGTTTAGGACCAACAGAAGATGATTTAACTAAGCAAACT
ACTGCTAAATTTCTACATAAAGAGATTAGGTATGATGAAGAAGCAATGAATCGATTAGAAGCCTATTTTGCTAATTCTAA
TAGAGGCGTTACTGAAAATAATAAACGCCAAGCTTTAACAATTGAAGGTGGAACAACTCTTCAAAATGACGCCGGACTTG
CTTGTGGTGTGTTGTACCAAGCCGATTCAACTTCTTACTTATTGTTGCCAGGCCCTCCAAGAGAAATGAAAGCAATGGCA
GAAGGTATTACTAAGAAATTATTACAAGAGCTTTTACCCAACGATTCTAAATTAGTCTCAAGATATTTAAGATACATTGG
AATTGGTGAGTCGAAACTCGCAGAAGATTTACACGAATTAATTACAACACAAACTAATCCAACTATTGCAACGTATGCTA
AAACAAATGAAGTGATGTTACGAATTGCCGCAAAAGCTAAAACAGAAGATGCAGGACAATTGATGTTAGATGCTTTAGAA
GAAAAAATAAACCAAAAAGTAGGTGAGTTTTTTTACGGATACGGAGAAAATTTAAGTTTAGAAGAAGTTGTGGTTGACCT
TCTAAAGACAAGAAAAGAAACTTTATCTGTTGTTGAAGGTGTCTCAGGTGGTCTATGCCAAGGTAAATTAACTGATATTA
AGGGAAGTTCTGAAGTTTTTCTAGGTGGTATGGTAACTTACTCTAATAAAAGTAAACAACAATTACTTAATTTAGCAGGT
GTTCAGTCAGAAGAAATATTAATCGTAGGAAAAGAACAAGCCATTAAATTAGCGGAGTCTATCAAAAAAGTCATGGGGAC
TGATTACGGTTTATCTATTATTGGTGTAGCAGGGCCTGAAACAGTAGACAATCTTCCTGTCGGTTCTATATTTATCGCTT
TAGCTACAAACGAAGGGACTATTTCCTACGAAGTTCTTATTAATAGGGAGCGAGATTACATTAAAGATGGTGCAGTTAAA
CAAGCTTTAAACCTACTAAGGAAAAAAATAATTAGCTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

46.698

100

0.481
  cinA Streptococcus mitis NCTC 12261

46.698

100

0.481
  cinA Streptococcus mutans UA159

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

45.991

100

0.473
  cinA Streptococcus pneumoniae TIGR4

45.991

100

0.473
  cinA Streptococcus pneumoniae R6

45.991

100

0.473
  cinA Streptococcus pneumoniae D39

45.755

100

0.471
  cinA Streptococcus suis isolate S10

42.995

100

0.432
  cinA Bacillus subtilis subsp. subtilis str. 168

41.032

98.786

0.405