Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K5K99_RS14285 Genome accession   NZ_CP081461
Coordinates   2797897..2798946 (-) Length   349 a.a.
NCBI ID   WP_167799679.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 36B2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2792897..2803946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K99_RS14265 (K5K99_14225) - 2793175..2793900 (-) 726 WP_167806093.1 ThuA domain-containing protein -
  K5K99_RS14270 (K5K99_14230) - 2793970..2795049 (-) 1080 WP_114289888.1 Gfo/Idh/MocA family protein -
  K5K99_RS14275 (K5K99_14235) - 2795123..2796004 (-) 882 WP_167799678.1 AraC family transcriptional regulator -
  K5K99_RS14280 (K5K99_14240) rny 2796126..2797679 (-) 1554 WP_086341214.1 ribonuclease Y -
  K5K99_RS14285 (K5K99_14245) recA 2797897..2798946 (-) 1050 WP_167799679.1 recombinase RecA Machinery gene
  K5K99_RS14290 (K5K99_14250) cinA 2799035..2800273 (-) 1239 WP_227258870.1 competence/damage-inducible protein A Machinery gene
  K5K99_RS14295 (K5K99_14255) sdaAB 2800445..2801104 (+) 660 WP_114289892.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  K5K99_RS14300 (K5K99_14260) sdaAA 2801117..2801986 (+) 870 WP_227258871.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  K5K99_RS14305 (K5K99_14265) - 2802004..2802543 (+) 540 WP_227258872.1 putative glycolipid-binding domain-containing protein -
  K5K99_RS14310 (K5K99_14270) - 2802558..2802788 (-) 231 WP_167799683.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37664.84 Da        Isoelectric Point: 4.6599

>NTDB_id=596612 K5K99_RS14285 WP_167799679.1 2797897..2798946(-) (recA) [Vagococcus fluvialis strain 36B2]
MSDNRKAALDAALKKIEKDFGKGSVMKLGEKVDTQISTVSSGSLALDSALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
SVQKQGGTAAFIDAEHALDPKYAQALGVNIDELLLSQPDTGEQGLNIAEALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNR
TKIKVVKNKVAPPFRIAEVDIMYGEGISQEGELLDMASDKDIVNKSGAWYSYNDEKIGQGRENAKKFLADNPDIMQEIYE
KVRIAYNMDGVILEEVEEDVEDLGLDLEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=596612 K5K99_RS14285 WP_167799679.1 2797897..2798946(-) (recA) [Vagococcus fluvialis strain 36B2]
ATGTCAGATAATCGTAAAGCAGCATTAGATGCAGCATTAAAGAAGATAGAAAAAGATTTTGGTAAAGGATCAGTAATGAA
GTTAGGTGAGAAAGTAGATACTCAAATTTCTACAGTTTCAAGTGGTTCTTTAGCTTTAGACTCAGCTTTAGGAGTTGGTG
GCTATCCTCGAGGTAGAATTATTGAAGTCTATGGACCAGAGAGTTCTGGTAAAACAACAGTCGCTTTACACGCTATTGCC
TCAGTTCAAAAACAAGGTGGAACAGCAGCGTTTATCGATGCTGAGCATGCCTTAGATCCTAAATATGCACAAGCTTTAGG
AGTAAATATTGATGAGTTACTATTATCTCAACCAGATACAGGTGAGCAAGGATTAAATATTGCAGAAGCTTTAGTATCAA
GTGGTGCCATTGATATTGTAGTAGTTGACTCGGTAGCAGCTTTAGTACCACGTGCTGAGATTGATGGAGAGATGGGAGAC
AGCCACGTAGGGTTACAAGCTCGTTTAATGTCTCAAGCTCTAAGAAAATTATCAGGTACTATTAACAAAACTAAAACAAT
TGCGATTTTTATTAACCAAATCCGTGAAAAAGTTGGAGTTATGTTCGGTAACCCAGAAGTAACGCCAGGTGGACGTGCAC
TTAAATTCTACGCAACAGTTCGTTTAGAAGTAAGACGTGCAGAGCAGTTAAAACAAGGTACAGACATTATTGGTAACCGT
ACTAAAATTAAAGTTGTTAAAAATAAAGTAGCTCCTCCGTTTAGAATTGCTGAAGTAGATATTATGTACGGAGAAGGTAT
CTCTCAAGAAGGAGAACTTCTTGATATGGCTTCAGATAAAGATATCGTTAATAAGAGTGGTGCTTGGTATTCTTATAACG
ATGAGAAAATTGGTCAAGGACGAGAAAATGCTAAGAAATTCTTAGCGGATAACCCTGATATTATGCAAGAAATCTATGAA
AAAGTCCGTATCGCATATAATATGGATGGCGTTATTCTTGAAGAAGTAGAGGAAGACGTAGAAGATTTAGGATTAGATTT
AGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.138

95.702

0.777
  recA Bacillus subtilis subsp. subtilis str. 168

81.459

94.269

0.768
  recA Streptococcus pyogenes NZ131

69.188

100

0.708
  recA Streptococcus mitis NCTC 12261

72.012

98.281

0.708
  recA Streptococcus pneumoniae TIGR4

71.802

98.567

0.708
  recA Streptococcus pneumoniae Rx1

71.802

98.567

0.708
  recA Streptococcus pneumoniae D39

71.802

98.567

0.708
  recA Streptococcus pneumoniae R6

71.802

98.567

0.708
  recA Streptococcus mitis SK321

71.72

98.281

0.705
  recA Streptococcus mutans UA159

72.892

95.129

0.693
  recA Lactococcus lactis subsp. cremoris KW2

70.427

93.983

0.662
  recA Ralstonia pseudosolanacearum GMI1000

60.795

100

0.613
  recA Neisseria gonorrhoeae strain FA1090

61.696

97.994

0.605
  recA Neisseria gonorrhoeae MS11

61.696

97.994

0.605
  recA Neisseria gonorrhoeae MS11

61.696

97.994

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

95.415

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

93.983

0.593
  recA Glaesserella parasuis strain SC1401

62.048

95.129

0.59
  recA Acinetobacter baylyi ADP1

63.467

92.55

0.587
  recA Acinetobacter baumannii D1279779

62.539

92.55

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.733

92.264

0.579
  recA Helicobacter pylori 26695

58.721

98.567

0.579
  recA Helicobacter pylori strain NCTC11637

58.721

98.567

0.579
  recA Vibrio cholerae strain A1552

61.61

92.55

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

92.55

0.57
  recA Pseudomonas stutzeri DSM 10701

61.3

92.55

0.567