Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K5K99_RS14290 Genome accession   NZ_CP081461
Coordinates   2799035..2800273 (-) Length   412 a.a.
NCBI ID   WP_227258870.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 36B2     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2794035..2805273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K99_RS14275 (K5K99_14235) - 2795123..2796004 (-) 882 WP_167799678.1 AraC family transcriptional regulator -
  K5K99_RS14280 (K5K99_14240) rny 2796126..2797679 (-) 1554 WP_086341214.1 ribonuclease Y -
  K5K99_RS14285 (K5K99_14245) recA 2797897..2798946 (-) 1050 WP_167799679.1 recombinase RecA Machinery gene
  K5K99_RS14290 (K5K99_14250) cinA 2799035..2800273 (-) 1239 WP_227258870.1 competence/damage-inducible protein A Machinery gene
  K5K99_RS14295 (K5K99_14255) sdaAB 2800445..2801104 (+) 660 WP_114289892.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  K5K99_RS14300 (K5K99_14260) sdaAA 2801117..2801986 (+) 870 WP_227258871.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  K5K99_RS14305 (K5K99_14265) - 2802004..2802543 (+) 540 WP_227258872.1 putative glycolipid-binding domain-containing protein -
  K5K99_RS14310 (K5K99_14270) - 2802558..2802788 (-) 231 WP_167799683.1 hypothetical protein -
  K5K99_RS14315 (K5K99_14275) nhaC 2802829..2804211 (-) 1383 WP_227258873.1 Na+/H+ antiporter NhaC -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45151.63 Da        Isoelectric Point: 4.5923

>NTDB_id=596613 K5K99_RS14290 WP_227258870.1 2799035..2800273(-) (cinA) [Vagococcus fluvialis strain 36B2]
MKAEIIAVGTEILLGEIVNTNAAFLSEYLSNLGFDLYHQQVVGDNEDRLLVCLEEASNRSDLVVVCGGLGPTEDDLTKQT
TAKFLHKEIRYDEEAMNRLEAYFANSNRGVTENNKRQALTIEGGTTLQNDAGLACGVLYQADLTSYLLLPGPPREMKAMA
EGVTKKLLQELLPNDSKLVSRYLRYIGIGESKLAEDLHELITKQTNPTIATYAKTNEVMLRIAAKAKTEDAGQWMLDALE
EKINQKVGEFFYGYGENLSLEEVVIDLLKTRKETLSVIEGVSGGLCQGKLTDIKGSSEVFLGGMVTYSNKSKQQLLNLAG
VQSEEILIVGEEQAIKLAESIKKVMGTDYGLSIIGVAGPETVDNLPVGSIFIALATNEGTISYEVLINRERDYIKDGAVK
QALNLLRKKIIS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=596613 K5K99_RS14290 WP_227258870.1 2799035..2800273(-) (cinA) [Vagococcus fluvialis strain 36B2]
ATGAAAGCTGAAATAATTGCAGTTGGAACAGAAATTTTACTTGGCGAGATAGTTAATACGAATGCTGCTTTTCTATCTGA
GTATCTAAGTAATTTAGGCTTTGATTTGTACCATCAACAAGTAGTTGGAGACAATGAAGATAGATTATTAGTTTGTTTAG
AAGAAGCAAGTAACAGGTCGGATTTAGTAGTTGTATGCGGTGGTTTAGGACCAACAGAAGATGATTTAACTAAGCAAACT
ACTGCTAAATTTCTACATAAAGAGATTAGGTATGATGAAGAAGCAATGAATCGATTAGAAGCCTATTTTGCTAATTCTAA
TAGAGGCGTTACTGAAAATAATAAACGCCAAGCTTTAACAATTGAAGGTGGAACAACTCTTCAAAATGACGCCGGACTTG
CTTGTGGTGTGTTGTACCAAGCTGATTTAACTTCTTACTTATTGTTGCCAGGTCCTCCAAGAGAAATGAAAGCAATGGCA
GAAGGTGTTACTAAGAAATTATTACAAGAGCTTTTACCCAACGATTCTAAATTAGTCTCAAGATATTTAAGATACATTGG
AATTGGTGAGTCGAAACTCGCAGAAGATTTACACGAATTAATTACCAAACAAACTAATCCAACTATTGCAACGTATGCTA
AAACAAATGAAGTGATGTTGCGAATTGCCGCAAAAGCTAAAACAGAAGATGCAGGACAATGGATGTTAGATGCTTTAGAA
GAAAAAATAAACCAAAAAGTAGGTGAGTTTTTTTACGGATACGGAGAAAATTTAAGTTTAGAAGAAGTTGTGATTGACCT
TCTAAAGACAAGAAAAGAAACTTTATCTGTTATTGAAGGTGTCTCAGGTGGTTTATGTCAAGGTAAATTAACTGATATTA
AGGGAAGTTCTGAAGTTTTTCTAGGTGGTATGGTAACTTACTCTAATAAAAGTAAACAACAATTACTTAATTTAGCAGGT
GTTCAGTCAGAAGAAATATTAATCGTAGGAGAAGAACAAGCCATTAAATTAGCGGAGTCTATCAAAAAAGTCATGGGGAC
TGATTACGGTTTATCTATTATTGGTGTAGCAGGCCCTGAAACAGTAGACAATCTTCCTGTCGGTTCTATCTTTATCGCTT
TAGCTACAAACGAAGGGACTATTTCCTACGAAGTTCTTATTAATAGGGAGCGAGATTACATTAAAGATGGTGCAGTTAAA
CAAGCTTTAAACCTACTAAGGAAAAAAATAATTAGCTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

47.031

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.031

100

0.481
  cinA Streptococcus mutans UA159

47.255

100

0.481
  cinA Streptococcus pneumoniae Rx1

46.318

100

0.473
  cinA Streptococcus pneumoniae TIGR4

46.318

100

0.473
  cinA Streptococcus pneumoniae R6

46.318

100

0.473
  cinA Streptococcus pneumoniae D39

46.081

100

0.471
  cinA Streptococcus suis isolate S10

42.754

100

0.43
  cinA Bacillus subtilis subsp. subtilis str. 168

40.786

98.786

0.403