Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ITG12_RS13865 Genome accession   NZ_CP080238
Coordinates   2968116..2969159 (+) Length   347 a.a.
NCBI ID   WP_038870267.1    Uniprot ID   -
Organism   Vibrio sp. ED002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2963116..2974159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG12_RS13850 (ITG12_13770) rpoS 2963726..2964709 (+) 984 WP_038870341.1 RNA polymerase sigma factor RpoS Regulator
  ITG12_RS13855 (ITG12_13775) mutS 2964786..2967347 (-) 2562 WP_248873151.1 DNA mismatch repair protein MutS -
  ITG12_RS13860 (ITG12_13780) pncC 2967433..2967915 (+) 483 WP_038870269.1 nicotinamide-nucleotide amidase -
  ITG12_RS13865 (ITG12_13785) recA 2968116..2969159 (+) 1044 WP_038870267.1 recombinase RecA Machinery gene
  ITG12_RS13870 (ITG12_13790) recX 2969340..2969807 (+) 468 WP_248873152.1 recombination regulator RecX -
  ITG12_RS13875 (ITG12_13795) alaS 2969950..2972547 (+) 2598 WP_038881218.1 alanine--tRNA ligase -
  ITG12_RS13880 (ITG12_13800) - 2972751..2973938 (+) 1188 WP_038870262.1 aspartate kinase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37411.85 Da        Isoelectric Point: 5.0726

>NTDB_id=591583 ITG12_RS13865 WP_038870267.1 2968116..2969159(+) (recA) [Vibrio sp. ED002]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLREHTEVAKTIDA
KLREMLLSPALPEAPEAGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=591583 ITG12_RS13865 WP_038870267.1 2968116..2969159(+) (recA) [Vibrio sp. ED002]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTGCCAATGGGTCGTATCGTAGAAGTTTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTAGAGCTTATTGCA
GCAGCGCAACGTGAAGGTAAAACTTGTGCATTTATCGATGCGGAGCACGCGCTAGATCCTGTATACGCGAAGAAACTAGG
TGTTGATATCGATGCTCTACTTGTTTCTCAGCCTGATACGGGTGAGCAAGCTCTTGAGATTTGTGACGCACTTGCACGTT
CTGGTGCTATCGACGTCATGGTTGTCGACTCTGTTGCGGCACTTACTCCAAAGGCTGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACCACTACTGGTGGTAACGCTC
TTAAATTCTACGCTTCTGTTCGTCTAGATATCCGCCGTACTGGCGCAATCAAAGAAGGCGATGAAGTTGTGGGTAACGAA
ACGCGCATTAAAGTGGTTAAAAACAAGATTGCTGCACCGTTTAAAGAAGCGAATACGCAAATCATGTATGGCCAAGGCTT
CAATCGTGAAGGTGAATTAGTCGACCTAGGCGTTAAGCACAAGCTAGTAGAAAAAGCGGGTGCATGGTACAGCTACCAAG
GCGATAAGATCGGTCAAGGTAAAGCGAACGCTTGTAACTACCTACGTGAGCACACCGAAGTGGCAAAGACTATCGATGCT
AAGCTACGTGAAATGCTACTTTCTCCTGCTTTACCTGAAGCGCCAGAAGCCGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

94.225

94.813

0.893
  recA Vibrio cholerae O1 biovar El Tor strain E7946

94.225

94.813

0.893
  recA Acinetobacter baylyi ADP1

71.965

99.712

0.718
  recA Acinetobacter baumannii D1279779

74.695

94.524

0.706
  recA Pseudomonas stutzeri DSM 10701

74.006

94.236

0.697
  recA Glaesserella parasuis strain SC1401

69.939

93.948

0.657
  recA Neisseria gonorrhoeae MS11

67.485

93.948

0.634
  recA Neisseria gonorrhoeae MS11

67.485

93.948

0.634
  recA Neisseria gonorrhoeae strain FA1090

67.485

93.948

0.634
  recA Ralstonia pseudosolanacearum GMI1000

70.418

89.625

0.631
  recA Helicobacter pylori strain NCTC11637

60.588

97.983

0.594
  recA Helicobacter pylori 26695

60.294

97.983

0.591
  recA Streptococcus mitis SK321

59.012

99.135

0.585
  recA Streptococcus pneumoniae R6

61.92

93.084

0.576
  recA Streptococcus pneumoniae D39

61.92

93.084

0.576
  recA Streptococcus pneumoniae TIGR4

61.92

93.084

0.576
  recA Streptococcus pneumoniae Rx1

61.92

93.084

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.382

91.931

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

59.819

95.389

0.571
  recA Streptococcus mitis NCTC 12261

60.991

93.084

0.568
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.389

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.83

91.354

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.372

93.084

0.562
  recA Streptococcus mutans UA159

60

93.66

0.562