Detailed information NTG0591581

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ITG12_RS13850
• Genome accession: NZ_CP080238
• Coordinates: 2963726..2964709 (+)
• Length: 327 a.a.
• NCBI ID: WP_038870341.1
• Uniprot ID: A0A2N7N4T7
• Organism: Vibrio sp. ED002
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2958726..2969709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITG12_RS13815 (ITG12_13735)	ftsB	2958735..2959016 (+)	282	WP_038870281.1	cell division protein FtsB	-
ITG12_RS13820 (ITG12_13740)	ispD	2959018..2959725 (+)	708	WP_038881208.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ITG12_RS13825 (ITG12_13745)	ispF	2959740..2960216 (+)	477	WP_038870279.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ITG12_RS13830 (ITG12_13750)	truD	2960263..2961306 (+)	1044	WP_039976444.1	tRNA pseudouridine(13) synthase TruD	-
ITG12_RS13835 (ITG12_13755)	surE	2961306..2962082 (+)	777	WP_248873150.1	5'/3'-nucleotidase SurE	-
ITG12_RS13840 (ITG12_13760)	-	2962082..2962708 (+)	627	WP_038870274.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ITG12_RS13845 (ITG12_13765)	-	2962723..2963646 (+)	924	WP_038870272.1	peptidoglycan DD-metalloendopeptidase family protein	-
ITG12_RS13850 (ITG12_13770)	rpoS	2963726..2964709 (+)	984	WP_038870341.1	RNA polymerase sigma factor RpoS	Regulator
ITG12_RS13855 (ITG12_13775)	mutS	2964786..2967347 (-)	2562	WP_248873151.1	DNA mismatch repair protein MutS	-
ITG12_RS13860 (ITG12_13780)	pncC	2967433..2967915 (+)	483	WP_038870269.1	nicotinamide-nucleotide amidase	-
ITG12_RS13865 (ITG12_13785)	recA	2968116..2969159 (+)	1044	WP_038870267.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37258.23 Da
• Isoelectric Point: 4.7785

>NTDB_id=591581 ITG12_RS13850 WP_038870341.1 2963726..2964709(+) (rpoS) [Vibrio sp. ED002]
MSISNTVTKVEEFEYDNATTGSGSPELEKTSKKTKATAREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIDWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEVD

Nucleotide

• Length: 984 bp

>NTDB_id=591581 ITG12_RS13850 WP_038870341.1 2963726..2964709(+) (rpoS) [Vibrio sp. ED002]
ATGAGTATCAGCAACACAGTCACCAAAGTTGAAGAGTTCGAATATGACAACGCAACGACAGGAAGCGGAAGTCCTGAACT
TGAAAAAACATCTAAAAAAACCAAAGCAACAGCTCGCGAAGAGTTTGATGCGAGCAATAAAAGTCTAGATGCGACACAAC
TGTACTTAGGCGAAATTGGCTTTTCACCACTACTCACAGCAGAAGAAGAAGTACTTTACGCTCGTAGAGCATTACGTGGT
GATGAAGCTGCCCGTAAGCGAATGATCGAAAGTAATTTACGTCTTGTCGTGAAGATCTCTCGTCGTTACAGCAATCGCGG
TTTAGCACTTCTTGATCTTATCGAAGAAGGCAATCTGGGCTTGATCCGTGCGGTTGAGAAGTTTGATCCTGAACGAGGTT
TCCGTTTTTCAACCTACGCAACGTGGTGGATTCGCCAAACGATTGAGCGTGCGTTGATGAACCAAACTCGCACCATTCGT
TTGCCAATTCATGTGGTTAAAGAGCTAAACATTTATCTGCGTACCGCACGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACGGCAGAAGAAATTGCAGCTCAGCTAGATATTCCAGTTGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATCA
GCTCTGTCGATACACCTATCGGTGGTGATGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCAAACAATTCGGATCCT
GAAGTATCCACTCAAGACGATGACATCAAATCCTCGTTGATTGACTGGCTAGAAGAGCTAAATCCAAAACAGAAAGAAGT
GCTTGCTCGTCGTTTTGGTTTACTTGGCTACGAGCCATCAACGCTTGAGGAAGTGGGACGCGAGATTGGTCTAACACGCG
AACGTGTACGTCAGATTCAAGTTGAAGGTTTACGTCGATTGCGCGAAATCTTGATTAAGCAAGGTTTGAACATGGAAAAC
CTGTTCAACGTGGAAGTCGACTAG

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A2N7N4T7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.853