Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPB404_RS00455 Genome accession   NZ_CP079821
Coordinates   100277..101434 (-) Length   385 a.a.
NCBI ID   WP_219074772.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 95277..106434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS00420 (LPB404_00420) - 95797..97044 (-) 1248 WP_219074769.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LPB404_RS00425 (LPB404_00425) - 97320..97631 (-) 312 WP_006595405.1 DUF1292 domain-containing protein -
  LPB404_RS00430 (LPB404_00430) ruvX 97649..98068 (-) 420 WP_117744821.1 Holliday junction resolvase RuvX -
  LPB404_RS00435 (LPB404_00435) - 98068..98334 (-) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  LPB404_RS00440 (LPB404_00440) - 98476..99018 (-) 543 WP_219074770.1 hypothetical protein -
  LPB404_RS00445 (LPB404_00445) - 99029..99622 (-) 594 WP_219074771.1 SP0191 family lipoprotein -
  LPB404_RS00450 (LPB404_00450) spx 99806..100204 (-) 399 WP_006595399.1 transcriptional regulator Spx -
  LPB404_RS00455 (LPB404_00455) recA 100277..101434 (-) 1158 WP_219074772.1 recombinase RecA Machinery gene
  LPB404_RS00460 (LPB404_00460) cinA 101481..102749 (-) 1269 WP_219074773.1 competence/damage-inducible protein A Machinery gene
  LPB404_RS00465 (LPB404_00465) - 103108..104145 (+) 1038 WP_219074774.1 S66 peptidase family protein -
  LPB404_RS00470 (LPB404_00470) - 104197..104763 (-) 567 WP_219074775.1 DNA-3-methyladenine glycosylase I -
  LPB404_RS00475 (LPB404_00475) ruvA 104773..105366 (-) 594 WP_219074776.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 41583.30 Da        Isoelectric Point: 4.7763

>NTDB_id=589717 LPB404_RS00455 WP_219074772.1 100277..101434(-) (recA) [Streptococcus rubneri strain LPB0404]
MAKKQKKLDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELLKIATDLDLIQKAGAWYSYNGEKIGQGSE
NAKKYLADHPEIFDEIDHQVRVRFGLIDDDTAVVAQDEVAESSLVEEVTLDLDDAIEIEEYFFSK

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=589717 LPB404_RS00455 WP_219074772.1 100277..101434(-) (recA) [Streptococcus rubneri strain LPB0404]
ATGGCGAAAAAACAGAAAAAATTAGATGATATCTCAAAGAAATTTGGAGATGAGCGTGAAAAAGCCCTCAATGATGCCCT
GAAGTTGATCGAAAAAGACTTTGGTAAAGGATCCATCATGCGTCTGGGTGAACGTGCAGAACAAAAAGTACAAGTCATGA
GCTCTGGTTCCTTGGCTCTTGATATTGCCTTGGGTGCTGGTGGTTATCCAAAAGGTCGGATTATCGAAATCTATGGTCCA
GAATCATCAGGTAAAACAACGGTTGCCCTCCATGCAGTAGCGCAAGCCCAAAAAGAAGGAGGCATTGCTGCCTTTATCGA
CGCCGAGCATGCCTTGGATCCATCTTATGCAGCAGCTCTTGGGGTCAATATTGATGAACTCCTCTTGTCTCAACCAGACT
CAGGGGAACAAGGACTTGAAATTGCGGGTAAATTGATCGACTCAGGTGCCGTTGACTTGGTCGTAATCGACTCTGTTGCT
GCCTTAGTACCACGCGCAGAAATCGATGGCGATATCGGTGACAGCCACGTTGGTTTGCAAGCGCGGATGATGAGCCAAGC
CATGCGCAAACTCGGAGCTTCGATCAACAAGACCAAGACCATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGGAACCCTGAAACAACTCCTGGTGGTCGTGCCCTTAAGTTCTACGCTTCTGTTCGTTTAGATGTCCGTGGA
AATACTCAAATCAAGGGAACGGGGGATCAAAAAGATACCAACGTTGGTAAAGAAACCAAGATCAAGGTTGTGAAAAATAA
GGTAGCTCCACCATTCAAGGAAGCTATGGTTGAAATCATGTACGGAGAAGGAATTTCGCGTACAGGTGAATTGCTGAAAA
TTGCAACAGACCTCGATTTGATCCAAAAAGCTGGTGCTTGGTATTCTTATAACGGCGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGAAATACTTGGCAGACCATCCAGAAATTTTTGATGAGATTGATCACCAAGTGCGCGTACGCTTTGGTTTGAT
CGATGATGACACTGCTGTAGTTGCACAAGATGAAGTAGCTGAAAGCTCACTTGTTGAAGAAGTAACACTAGATCTTGATG
ATGCAATTGAGATTGAAGAGTATTTTTTTTCAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

91.339

98.961

0.904
  recA Streptococcus mitis SK321

91.076

98.961

0.901
  recA Streptococcus pneumoniae Rx1

88.831

100

0.888
  recA Streptococcus pneumoniae D39

88.831

100

0.888
  recA Streptococcus pneumoniae R6

88.831

100

0.888
  recA Streptococcus pneumoniae TIGR4

88.831

100

0.888
  recA Streptococcus mutans UA159

84.755

100

0.852
  recA Streptococcus pyogenes NZ131

85.789

98.701

0.847
  recA Lactococcus lactis subsp. cremoris KW2

79.31

90.39

0.717
  recA Latilactobacillus sakei subsp. sakei 23K

69.578

86.234

0.6
  recA Bacillus subtilis subsp. subtilis str. 168

67.656

87.532

0.592
  recA Glaesserella parasuis strain SC1401

60.882

88.312

0.538
  recA Acinetobacter baumannii D1279779

58.857

90.909

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

83.896

0.53
  recA Acinetobacter baylyi ADP1

59.13

89.61

0.53
  recA Vibrio cholerae strain A1552

62.462

84.416

0.527
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.462

84.416

0.527
  recA Neisseria gonorrhoeae strain FA1090

61.027

85.974

0.525
  recA Neisseria gonorrhoeae MS11

61.027

85.974

0.525
  recA Neisseria gonorrhoeae MS11

61.027

85.974

0.525
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

86.234

0.522
  recA Ralstonia pseudosolanacearum GMI1000

59.337

86.234

0.512
  recA Pseudomonas stutzeri DSM 10701

57.143

89.091

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

85.974

0.496
  recA Helicobacter pylori strain NCTC11637

56.364

85.714

0.483
  recA Helicobacter pylori 26695

56.364

85.714

0.483