Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LPB404_RS00460 Genome accession   NZ_CP079821
Coordinates   101481..102749 (-) Length   422 a.a.
NCBI ID   WP_219074773.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96481..107749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS00425 (LPB404_00425) - 97320..97631 (-) 312 WP_006595405.1 DUF1292 domain-containing protein -
  LPB404_RS00430 (LPB404_00430) ruvX 97649..98068 (-) 420 WP_117744821.1 Holliday junction resolvase RuvX -
  LPB404_RS00435 (LPB404_00435) - 98068..98334 (-) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  LPB404_RS00440 (LPB404_00440) - 98476..99018 (-) 543 WP_219074770.1 hypothetical protein -
  LPB404_RS00445 (LPB404_00445) - 99029..99622 (-) 594 WP_219074771.1 SP0191 family lipoprotein -
  LPB404_RS00450 (LPB404_00450) spx 99806..100204 (-) 399 WP_006595399.1 transcriptional regulator Spx -
  LPB404_RS00455 (LPB404_00455) recA 100277..101434 (-) 1158 WP_219074772.1 recombinase RecA Machinery gene
  LPB404_RS00460 (LPB404_00460) cinA 101481..102749 (-) 1269 WP_219074773.1 competence/damage-inducible protein A Machinery gene
  LPB404_RS00465 (LPB404_00465) - 103108..104145 (+) 1038 WP_219074774.1 S66 peptidase family protein -
  LPB404_RS00470 (LPB404_00470) - 104197..104763 (-) 567 WP_219074775.1 DNA-3-methyladenine glycosylase I -
  LPB404_RS00475 (LPB404_00475) ruvA 104773..105366 (-) 594 WP_219074776.1 Holliday junction branch migration protein RuvA -
  LPB404_RS00480 (LPB404_00480) mutL 105387..107336 (-) 1950 WP_219074777.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45265.74 Da        Isoelectric Point: 4.7147

>NTDB_id=589718 LPB404_RS00460 WP_219074773.1 101481..102749(-) (cinA) [Streptococcus rubneri strain LPB0404]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYFQTAVGDNVDRLLSVLAIARDRSDLVILTGGLGPTEDDLTKQT
LAQFLDRDLTFDPEAMAKLDRFFASRPDHVRTPNNLRQAQIVTGSTPLQNPTGLAVGGLIEVEGVSYVVLPGPPSELKPM
VNDELVPLLATGEKLYSRVLRFFGIGESQLVTVLADVIDGQTDPTLAPYAKTGEVTLRLSTKASSQEQADQKLDQLEQVI
LRHETLDGQPLSQLFYGYGDDNSLAKMAFELLRERGLTLTAAESLTAGMFQSTLANFSGASAVLPGGFVTYSIEEKSKML
QIPLTELQTYGVVSAHTAERMAAQARLLTGADYGVSLTGVAGPDSLEGHPAGTVFIGIAGPKGVQSIKVNIAGRSRMDVR
KVAVLHAFNLVRKTVLLDENLL

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=589718 LPB404_RS00460 WP_219074773.1 101481..102749(-) (cinA) [Streptococcus rubneri strain LPB0404]
ATGAAAGCAGAGATCATTGCAGTGGGAACCGAAATTCTCACTGGACAAATTGTCAATACCAATGCGCAATTCTTATCAGA
AAAGTTGGCCAGTCTAGGGATCGACGTTTATTTCCAAACTGCAGTTGGAGATAATGTTGATCGTCTCTTGTCTGTTCTTG
CGATTGCGCGTGATCGAAGTGATCTCGTCATCCTCACAGGAGGTTTGGGGCCGACCGAAGACGATCTGACCAAGCAAACC
CTAGCCCAGTTCTTGGATAGAGACTTGACCTTTGATCCCGAAGCAATGGCCAAGTTGGATCGCTTCTTTGCCAGTCGGCC
AGACCATGTCCGAACTCCCAATAATCTGAGACAAGCTCAGATAGTAACGGGCTCTACGCCCCTTCAAAACCCAACCGGTT
TGGCAGTGGGAGGGCTGATCGAAGTAGAGGGCGTTAGCTATGTGGTCTTGCCTGGTCCTCCGAGTGAATTGAAACCCATG
GTCAATGATGAGTTGGTGCCTCTCCTAGCGACAGGAGAAAAGCTTTATTCACGCGTCTTGCGCTTCTTTGGAATTGGGGA
AAGCCAGCTGGTAACCGTCTTGGCGGATGTGATTGATGGTCAAACGGACCCAACCTTGGCGCCTTATGCCAAGACCGGAG
AAGTCACCTTGCGCTTGTCGACCAAGGCTTCGTCACAAGAGCAGGCAGATCAGAAATTGGATCAACTAGAGCAAGTGATT
CTCCGTCATGAGACCTTGGATGGCCAACCCTTGAGCCAGCTCTTCTATGGCTATGGAGATGACAATTCCCTAGCTAAGAT
GGCTTTTGAACTCTTGCGCGAGCGGGGCTTGACCCTGACCGCAGCGGAGAGCTTGACGGCCGGGATGTTCCAGTCGACTC
TGGCTAATTTTTCAGGAGCCTCAGCGGTCTTACCGGGAGGTTTCGTTACCTACAGCATAGAGGAAAAGAGCAAAATGCTC
CAAATTCCCCTAACTGAATTGCAAACATACGGAGTGGTCTCTGCCCATACAGCTGAGCGGATGGCGGCACAAGCCCGTCT
CCTAACAGGGGCTGACTATGGAGTCAGTCTGACAGGTGTAGCCGGTCCAGACAGCCTAGAAGGGCACCCAGCAGGGACTG
TCTTTATTGGAATTGCGGGACCTAAAGGAGTCCAATCGATCAAGGTCAATATCGCTGGTCGGAGTCGTATGGATGTTCGT
AAAGTCGCAGTCCTCCATGCCTTCAATCTGGTACGCAAGACTGTATTATTAGATGAAAATTTGCTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

72.967

99.052

0.723
  cinA Streptococcus mitis NCTC 12261

71.77

99.052

0.711
  cinA Streptococcus pneumoniae TIGR4

71.531

99.052

0.709
  cinA Streptococcus pneumoniae Rx1

71.531

99.052

0.709
  cinA Streptococcus pneumoniae R6

71.531

99.052

0.709
  cinA Streptococcus pneumoniae D39

71.292

99.052

0.706
  cinA Streptococcus mutans UA159

69.74

100

0.699
  cinA Streptococcus suis isolate S10

55.083

100

0.552
  cinA Bacillus subtilis subsp. subtilis str. 168

46.635

98.578

0.46