Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   KX728_RS08080 Genome accession   NZ_CP079724
Coordinates   1675811..1676962 (-) Length   383 a.a.
NCBI ID   WP_001085520.1    Uniprot ID   A0A291DB85
Organism   Streptococcus oralis strain 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1670811..1681962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS08050 (KX728_08045) - 1671098..1671559 (-) 462 WP_215804321.1 MarR family winged helix-turn-helix transcriptional regulator -
  KX728_RS08055 (KX728_08050) - 1671753..1672457 (+) 705 WP_215804320.1 CD20-like domain-containing protein -
  KX728_RS08060 (KX728_08055) - 1672508..1673224 (-) 717 WP_000532891.1 YebC/PmpR family DNA-binding transcriptional regulator -
  KX728_RS08065 (KX728_08060) - 1673321..1674691 (-) 1371 WP_215804319.1 MATE family efflux transporter -
  KX728_RS08070 (KX728_08065) - 1674801..1675355 (+) 555 WP_001054828.1 GNAT family N-acetyltransferase -
  KX728_RS08075 (KX728_08070) - 1675487..1675681 (-) 195 WP_000415527.1 PspC domain-containing protein -
  KX728_RS08080 (KX728_08075) recA 1675811..1676962 (-) 1152 WP_001085520.1 recombinase RecA Machinery gene
  KX728_RS08085 (KX728_08080) cinA 1677017..1678273 (-) 1257 WP_000642672.1 competence/damage-inducible protein A Machinery gene
  KX728_RS08090 (KX728_08085) - 1678346..1679386 (-) 1041 WP_000592175.1 LCP family protein -
  KX728_RS08095 (KX728_08090) - 1679391..1679912 (-) 522 WP_000455515.1 GNAT family N-acetyltransferase -
  KX728_RS08100 (KX728_08095) tsaE 1679902..1680345 (-) 444 WP_000556959.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  KX728_RS08105 (KX728_08100) comM 1680429..1681052 (-) 624 WP_215804318.1 hypothetical protein Regulator
  KX728_RS08110 (KX728_08105) ndk 1681187..1681606 (-) 420 WP_049501265.1 nucleoside-diphosphate kinase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 41063.77 Da        Isoelectric Point: 4.9523

>NTDB_id=588998 KX728_RS08080 WP_001085520.1 1675811..1676962(-) (recA) [Streptococcus oralis strain 34]
MAKKPTKKLDEIGKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELLKIASDLDIIQKAGAWYSYKGEKIGQGS
ENAKKYLADHPEIFDAIDHQVRVQYGLIEDEERTTPTSVAEDLAPNQEVTLDLGDGLEIEIED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=588998 KX728_RS08080 WP_001085520.1 1675811..1676962(-) (recA) [Streptococcus oralis strain 34]
ATGGCGAAAAAACCAACAAAAAAATTAGATGAAATTGGGAAAAAATTTGGAGCAGACCGTGAAAAAGCATTGAACGATGC
TCTTAAATTGATCGAAAAAGACTTTGGTAAAGGCTCAATCATGCGCTTGGGTGAGCGCGCGGAGCAAAAAGTTCAAGTGA
TGAGCTCAGGCTCATTGGCTCTGGACATTGCTCTTGGTTCAGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGA
CCAGAATCATCTGGTAAGACAACGGTTGCCCTTCACGCTGTTGCGCAAGCACAGAAAGAAGGTGGTATTGCAGCCTTTAT
CGATGCGGAACATGCTCTTGACCCAGCCTATGCTGCAGCCCTTGGTGTGAACATTGACGAATTGCTCTTGTCACAACCAG
ACTCAGGAGAGCAAGGTCTTGAAATTGCTGGAAAATTGATTGACTCAGGTGCAGTTGACCTTGTCGTTATCGACTCGGTT
GCGGCCCTTGTACCTCGTGCGGAAATTGATGGGGATATTGGAGATAGTCACGTTGGTTTGCAAGCTCGTATGATGAGCCA
GGCCATGCGTAAACTTGGTGCTTCTATCAATAAAACCAAAACAATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTG
GAGTCATGTTTGGAAATCCAGAAACAACACCTGGTGGACGTGCTTTGAAATTCTACGCTTCAGTCCGTTTGGATGTTCGT
GGAAGCACACAAATCAAGGGAACTGGTGATCAAAAAGATACCAATGTCGGTAAGGAAACCAAGATCAAGGTCGTGAAAAA
CAAGGTAGCTCCACCATTTAAGGAAGCCTTTGTTGAAATCATGTACGGAGAAGGAATTTCTAAGACTGGTGAGCTCTTGA
AGATTGCAAGTGATCTCGATATCATCCAAAAAGCGGGAGCATGGTACTCTTACAAGGGTGAAAAAATCGGACAAGGATCT
GAAAATGCTAAGAAATACTTGGCGGATCACCCAGAAATCTTTGATGCCATTGACCACCAAGTCCGTGTTCAATATGGTTT
GATTGAAGATGAAGAAAGAACAACTCCTACCTCTGTTGCAGAAGATTTAGCACCTAACCAAGAAGTAACACTTGACCTAG
GCGACGGACTCGAAATCGAAATTGAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A291DB85

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

92.727

100

0.932

  recA Streptococcus mitis SK321

92.468

100

0.93

  recA Streptococcus pneumoniae D39

89.717

100

0.911

  recA Streptococcus pneumoniae R6

89.717

100

0.911

  recA Streptococcus pneumoniae TIGR4

89.717

100

0.911

  recA Streptococcus pneumoniae Rx1

89.717

100

0.911

  recA Streptococcus pyogenes NZ131

85.263

99.217

0.846

  recA Streptococcus mutans UA159

84.595

100

0.846

  recA Lactococcus lactis subsp. cremoris KW2

77.904

92.167

0.718

  recA Latilactobacillus sakei subsp. sakei 23K

67.246

90.078

0.606

  recA Bacillus subtilis subsp. subtilis str. 168

69.091

86.162

0.595

  recA Vibrio cholerae strain A1552

59.593

89.817

0.535

  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.593

89.817

0.535

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

84.334

0.53

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

85.64

0.527

  recA Neisseria gonorrhoeae strain FA1090

60.909

86.162

0.525

  recA Neisseria gonorrhoeae MS11

60.909

86.162

0.525

  recA Neisseria gonorrhoeae MS11

60.909

86.162

0.525

  recA Acinetobacter baumannii D1279779

61.656

85.117

0.525

  recA Glaesserella parasuis strain SC1401

61.92

84.334

0.522

  recA Acinetobacter baylyi ADP1

61.043

85.117

0.52

  recA Pseudomonas stutzeri DSM 10701

57.514

90.339

0.52

  recA Ralstonia pseudosolanacearum GMI1000

58.133

86.684

0.504

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.576

86.162

0.496

  recA Helicobacter pylori 26695

57.143

85.901

0.491

  recA Helicobacter pylori strain NCTC11637

57.143

85.901

0.491