Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   KX728_RS08105 Genome accession   NZ_CP079724
Coordinates   1680429..1681052 (-) Length   207 a.a.
NCBI ID   WP_215804318.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1675429..1686052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS08075 (KX728_08070) - 1675487..1675681 (-) 195 WP_000415527.1 PspC domain-containing protein -
  KX728_RS08080 (KX728_08075) recA 1675811..1676962 (-) 1152 WP_001085520.1 recombinase RecA Machinery gene
  KX728_RS08085 (KX728_08080) cinA 1677017..1678273 (-) 1257 WP_000642672.1 competence/damage-inducible protein A Machinery gene
  KX728_RS08090 (KX728_08085) - 1678346..1679386 (-) 1041 WP_000592175.1 LCP family protein -
  KX728_RS08095 (KX728_08090) - 1679391..1679912 (-) 522 WP_000455515.1 GNAT family N-acetyltransferase -
  KX728_RS08100 (KX728_08095) tsaE 1679902..1680345 (-) 444 WP_000556959.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  KX728_RS08105 (KX728_08100) comM 1680429..1681052 (-) 624 WP_215804318.1 hypothetical protein Regulator
  KX728_RS08110 (KX728_08105) ndk 1681187..1681606 (-) 420 WP_049501265.1 nucleoside-diphosphate kinase -
  KX728_RS08115 (KX728_08110) rpoC 1681716..1685381 (-) 3666 WP_215804317.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23714.67 Da        Isoelectric Point: 9.2521

>NTDB_id=589000 KX728_RS08105 WP_215804318.1 1680429..1681052(-) (comM) [Streptococcus oralis strain 34]
MVKSIRLLLLIAVIQISFSSCLLWKESFLSLKQTNAYFLILIVGFSVLCAGINYFHTADQSRHSILHVQKKVSLVYCLLL
VVNLLATCLVLSESIQTTSKLQQELVDLFLPSFFFLLGVDLLIFLPFDKIFRDIENHLNKKKTVVISVLATLVFLRNPLV
ISSILLYISIGFLCARFLFPKCIQREISFYGHLIRDILFVFSIVVFF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=589000 KX728_RS08105 WP_215804318.1 1680429..1681052(-) (comM) [Streptococcus oralis strain 34]
ATGGTAAAATCAATTCGCCTATTGTTACTGATTGCAGTCATCCAGATTAGTTTTTCTAGTTGTCTATTATGGAAAGAATC
CTTTTTATCTTTAAAACAGACCAATGCTTATTTTTTGATTTTGATAGTAGGATTTTCTGTTCTTTGTGCTGGGATAAATT
ATTTCCATACAGCAGACCAGTCTAGACATAGTATTTTACATGTTCAAAAGAAAGTGAGTCTGGTTTATTGCCTCCTTTTA
GTAGTCAATCTTCTGGCAACCTGTCTGGTTCTCTCAGAAAGCATCCAGACCACTAGCAAATTGCAGCAGGAATTGGTTGA
CCTCTTTTTACCCTCCTTCTTTTTCTTGCTAGGAGTAGATCTATTGATTTTCTTACCTTTTGATAAAATTTTTCGCGATA
TAGAAAATCACCTAAATAAAAAGAAAACAGTCGTCATTTCCGTTCTAGCCACGTTGGTTTTCTTGAGGAATCCCTTAGTG
ATTTCCTCGATTCTCCTTTATATCAGTATTGGTTTTCTATGCGCACGTTTCCTTTTTCCAAAATGTATTCAAAGGGAAAT
CTCCTTTTATGGGCACCTGATTCGGGATATCCTGTTTGTTTTTTCAATAGTTGTATTCTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

51.942

99.517

0.517
  comM Streptococcus pneumoniae R6

51.942

99.517

0.517
  comM Streptococcus pneumoniae TIGR4

51.942

99.517

0.517
  comM Streptococcus mitis NCTC 12261

41.117

95.169

0.391
  comM Streptococcus mitis SK321

41.117

95.169

0.391