Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   TL13_RS00370 Genome accession   NC_021213
Coordinates   65622..66773 (+) Length   383 a.a.
NCBI ID   WP_015646246.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60622..71773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS00350 (TL13_0073) mutL 60781..62718 (+) 1938 WP_015646242.1 DNA mismatch repair endonuclease MutL -
  TL13_RS00355 (TL13_0074) ruvA 62757..63347 (+) 591 WP_015646243.1 Holliday junction branch migration protein RuvA -
  TL13_RS00360 (TL13_0075) - 63783..64352 (+) 570 WP_015646244.1 DNA-3-methyladenine glycosylase I -
  TL13_RS00365 (TL13_0076) cinA 64389..65570 (+) 1182 WP_015646245.1 competence/damage-inducible protein A Machinery gene
  TL13_RS00370 (TL13_0077) recA 65622..66773 (+) 1152 WP_015646246.1 recombinase RecA Machinery gene
  TL13_RS00375 (TL13_0078) spx 67009..67407 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  TL13_RS00380 (TL13_0079) - 67507..67773 (+) 267 WP_004195477.1 IreB family regulatory phosphoprotein -
  TL13_RS00385 (TL13_0080) ruvX 67773..68192 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  TL13_RS00390 (TL13_0081) - 68204..68524 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  TL13_RS00395 (TL13_0082) - 68795..69409 (+) 615 WP_015646247.1 nucleotidyltransferase family protein -
  TL13_RS00405 (TL13_0083) rpsJ 70069..70377 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  TL13_RS00410 (TL13_0084) rplC 70514..71140 (+) 627 WP_011921686.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40837.57 Da        Isoelectric Point: 4.8260

>NTDB_id=58602 TL13_RS00370 WP_015646246.1 65622..66773(+) (recA) [Streptococcus suis TL13]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDCKIRVHYGLIEADGVEEVATEETPVVAEEIQDVILDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=58602 TL13_RS00370 WP_015646246.1 65622..66773(+) (recA) [Streptococcus suis TL13]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGTTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGCTCAGGTAGTTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTATGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAGAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCGGAACACGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTATTGTCACAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTAATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTC
GCTGCCCTTGTACCTCGTGCAGAGATTGACGGTGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCA
GGCTATGCGCAAACTAGGTGCATCCATCAACAAAACTAAGACGGTAGCCATTTTCATTAACCAGTTGCGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGGACAGGTGATAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCTCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACTGCAAGATACGTGTTCATTATGGATT
GATTGAAGCAGATGGAGTTGAAGAAGTTGCGACCGAAGAAACTCCTGTTGTTGCGGAAGAAATCCAAGATGTTATCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

85.938

100

0.862
  recA Streptococcus pyogenes NZ131

84.595

100

0.846
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.508

99.739

0.833
  recA Streptococcus mitis SK321

82.984

99.739

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baumannii D1279779

59.827

90.339

0.54
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Pseudomonas stutzeri DSM 10701

57.507

92.167

0.53
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori 26695

57.879

86.162

0.499
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499

Multiple sequence alignment