Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   B1NLA3E_RS07225 Genome accession   NC_021171
Coordinates   1482967..1484010 (+) Length   347 a.a.
NCBI ID   WP_015593184.1    Uniprot ID   -
Organism   Bacillus sp. 1NLA3E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1477967..1489010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1NLA3E_RS07200 (B1NLA3E_06775) - 1478429..1478686 (+) 258 WP_015593179.1 DUF3243 domain-containing protein -
  B1NLA3E_RS07205 (B1NLA3E_06780) - 1478873..1479661 (+) 789 WP_015593180.1 DUF3388 domain-containing protein -
  B1NLA3E_RS07210 (B1NLA3E_06785) - 1479670..1480590 (+) 921 WP_328285167.1 RodZ domain-containing protein -
  B1NLA3E_RS07215 (B1NLA3E_06790) pgsA 1480651..1481229 (+) 579 WP_015593182.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  B1NLA3E_RS07220 (B1NLA3E_06795) cinA 1481246..1482499 (+) 1254 WP_015593183.1 competence/damage-inducible protein A Machinery gene
  B1NLA3E_RS07225 (B1NLA3E_06800) recA 1482967..1484010 (+) 1044 WP_015593184.1 recombinase RecA Machinery gene
  B1NLA3E_RS07230 (B1NLA3E_06805) rny 1484295..1485854 (+) 1560 WP_015593185.1 ribonuclease Y -
  B1NLA3E_RS07235 (B1NLA3E_06810) - 1485945..1486742 (+) 798 WP_015593186.1 TIGR00282 family metallophosphoesterase -
  B1NLA3E_RS07240 (B1NLA3E_06815) spoVS 1486897..1487157 (+) 261 WP_015593187.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37822.18 Da        Isoelectric Point: 5.2118

>NTDB_id=58395 B1NLA3E_RS07225 WP_015593184.1 1482967..1484010(+) (recA) [Bacillus sp. 1NLA3E]
MSNDRKAALEMALKQIEKQFGKGSIMKLGEQTDRKISTISSGSLALDVALGVGGYPRGRVVEIYGPESSGKTTVALHAIA
EVQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIEIIVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNK
TKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDMGSDLDIVQKSGSWYSYNDERLGQGRENAKLYLKENKALRVEIQQ
KIRDHYGLDIEKVIAEPDDHEELELID

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=58395 B1NLA3E_RS07225 WP_015593184.1 1482967..1484010(+) (recA) [Bacillus sp. 1NLA3E]
GTGAGTAATGATCGTAAAGCCGCGTTAGAAATGGCGTTAAAACAAATAGAAAAACAATTTGGTAAAGGATCTATCATGAA
ACTAGGTGAACAAACAGACCGCAAGATTTCCACGATTTCCAGCGGTTCCCTTGCTCTAGACGTAGCGCTTGGAGTAGGTG
GCTATCCAAGAGGACGAGTTGTTGAGATTTATGGTCCAGAAAGTTCTGGTAAAACAACTGTTGCCCTTCATGCTATCGCA
GAAGTCCAAGCAAATGGTGGTCAAGCGGCGTTTATCGACGCTGAGCATGCCCTTGACCCAGTCTATGCACAAAAACTAGG
TGTAAACATAGATGAACTCCTTCTTTCGCAACCAGACACAGGAGAGCAAGCCTTAGAAATTGCTGAAGCACTCGTGCGCA
GTGGTGCTATTGAAATTATTGTTGTTGACTCTGTTGCAGCTTTAGTTCCAAAAGCAGAAATTGAAGGCGAAATGGGAGAT
TCACACGTAGGGTTACAAGCGCGTTTAATGTCACAAGCCCTTCGTAAACTATCAGGCGCTATCAATAAATCAAAAACAAT
CGCTATCTTTATTAACCAAATTCGTGAAAAAGTTGGCGTTATGTTTGGAAACCCGGAAGTAACTCCGGGTGGCCGTGCCC
TTAAGTTCTATTCAACAGTTCGACTTGAAGTGCGCCGTGCTGAGCAATTAAAACAAGGAAACGATATCGTTGGTAACAAA
ACAAAGATTAAAGTCGTAAAGAATAAAGTTGCTCCACCTTTCCGTACAGCTGAAGTAGATATTATGTATGGAGAAGGGAT
TTCCAAAGAGGGCGAAATTATTGATATGGGCTCAGATCTTGATATCGTTCAAAAGAGTGGTTCTTGGTACTCATATAATG
ATGAGCGCCTTGGCCAAGGACGTGAGAATGCAAAACTCTATTTGAAAGAAAATAAAGCATTGCGCGTTGAAATCCAACAA
AAAATTCGCGATCATTATGGTCTTGACATCGAAAAGGTCATCGCAGAGCCAGATGATCATGAAGAATTAGAGTTGATCGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.048

95.677

0.833
  recA Latilactobacillus sakei subsp. sakei 23K

75.46

93.948

0.709
  recA Streptococcus pneumoniae TIGR4

68.997

94.813

0.654
  recA Streptococcus pneumoniae D39

68.997

94.813

0.654
  recA Streptococcus pneumoniae R6

68.997

94.813

0.654
  recA Streptococcus mitis SK321

68.997

94.813

0.654
  recA Streptococcus mitis NCTC 12261

68.997

94.813

0.654
  recA Streptococcus pneumoniae Rx1

68.997

94.813

0.654
  recA Streptococcus mutans UA159

67.771

95.677

0.648
  recA Streptococcus pyogenes NZ131

67.674

95.389

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.565

94.813

0.631
  recA Ralstonia pseudosolanacearum GMI1000

66.159

94.524

0.625
  recA Helicobacter pylori 26695

62.717

99.712

0.625
  recA Helicobacter pylori strain NCTC11637

62.717

99.712

0.625
  recA Neisseria gonorrhoeae MS11

65.559

95.389

0.625
  recA Neisseria gonorrhoeae strain FA1090

65.559

95.389

0.625
  recA Neisseria gonorrhoeae MS11

65.559

95.389

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

98.559

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.889

93.372

0.597
  recA Vibrio cholerae strain A1552

63.889

93.372

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

94.813

0.597
  recA Acinetobacter baylyi ADP1

60.526

98.559

0.597
  recA Acinetobacter baumannii D1279779

59.538

99.712

0.594
  recA Glaesserella parasuis strain SC1401

59.593

99.135

0.591
  recA Pseudomonas stutzeri DSM 10701

63.158

93.084

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

93.66

0.582

Multiple sequence alignment