Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KNV97_RS16040 Genome accession   NZ_CP076643
Coordinates   2173966..2175015 (-) Length   349 a.a.
NCBI ID   WP_136483310.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2168966..2180015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS16025 (KNV97_16025) - 2169195..2170382 (-) 1188 WP_218562312.1 aspartate kinase -
  KNV97_RS16030 (KNV97_16030) alaS 2170601..2173183 (-) 2583 WP_218562313.1 alanine--tRNA ligase -
  KNV97_RS16035 (KNV97_16035) recX 2173369..2173827 (-) 459 WP_136483311.1 recombination regulator RecX -
  KNV97_RS16040 (KNV97_16040) recA 2173966..2175015 (-) 1050 WP_136483310.1 recombinase RecA Machinery gene
  KNV97_RS16045 (KNV97_16045) pncC 2175187..2175675 (-) 489 WP_218562314.1 nicotinamide-nucleotide amidase -
  KNV97_RS16050 (KNV97_16050) mutS 2175762..2178323 (+) 2562 WP_218562315.1 DNA mismatch repair protein MutS -
  KNV97_RS16055 (KNV97_16055) rpoS 2178528..2179460 (-) 933 WP_407701911.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37752.23 Da        Isoelectric Point: 5.0652

>NTDB_id=576821 KNV97_RS16040 WP_136483310.1 2173966..2175015(-) (recA) [Vibrio ostreae strain OG9-811]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANACKYLRENTHIAKELDT
KLRDMLLNPTQVPADEPEFGAVPEQEEEL

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=576821 KNV97_RS16040 WP_136483310.1 2173966..2175015(-) (recA) [Vibrio ostreae strain OG9-811]
ATGGACGAGAACAAACAGAAGGCTCTGGCCGCAGCCCTGGGTCAAATTGAAAAGCAATTCGGTAAAGGTTCCATCATGCG
TCTGGGTGATAACCGCACCATGGATGTTGAAACCATTTCTACAGGTTCACTTTCTCTGGATATCGCTCTGGGTGCCGGTG
GCCTGCCAATGGGTCGTATCGTCGAAGTTTACGGTCCTGAATCATCAGGTAAAACCACACTGACTCTGGAACTGATTGCC
GCTGCGCAGCGTGAAGGTAAAACCTGTGCCTTTATCGATGCTGAGCACGCACTGGATCCTGTCTATGCCAAGAAGCTGGG
CGTAGATATCGACGCACTGCTGGTGTCTCAGCCGGATACCGGTGAACAGGCGCTGGAAATTTGTGATGCGCTGGCTCGTT
CAGGTGCGATTGACGTTATGGTGGTGGACTCGGTTGCAGCACTGACGCCGAAAGCGGAAATCGAAGGTGAGATGGGCGAC
AGCCACATGGGTCTGCAGGCACGTATGCTGTCACAGGCGATGCGTAAGCTGACCGGTAACCTGAAACAGTCGAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGGGTGATGTTCGGTAACCCGGAAACCACAACAGGTGGTAACGCGC
TGAAGTTCTACGCGTCAGTCCGTCTCGATATCCGTCGTACCGGCTCGATTAAAGAAGGCGACGAAGTGGTCGGTAACGAA
ACCCGTATCAAAGTGGTTAAGAACAAGATCGCGGCACCATTTAAAGAAGCCAATACTCAGATCATGTACGGTCAGGGCTT
TAACCGCGAAGGTGAGCTGGTGGATCTGGGCGTGAAACACAAGCTGGTGGAAAAAGCCGGTGCCTGGTACAGCTACAATG
GCGATAAAATTGGCCAGGGCAAAGCAAACGCGTGTAAGTACCTGCGTGAGAACACCCATATTGCCAAAGAACTGGACACT
AAACTGCGTGATATGCTGCTGAACCCGACTCAGGTGCCAGCCGATGAGCCAGAGTTTGGTGCAGTGCCAGAGCAAGAAGA
AGAGTTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

90.935

100

0.92
  recA Vibrio cholerae O1 biovar El Tor strain E7946

90.935

100

0.92
  recA Acinetobacter baumannii D1279779

74.924

93.696

0.702
  recA Pseudomonas stutzeri DSM 10701

74.312

93.696

0.696
  recA Acinetobacter baylyi ADP1

74.312

93.696

0.696
  recA Glaesserella parasuis strain SC1401

70.393

94.842

0.668
  recA Neisseria gonorrhoeae MS11

68.519

92.837

0.636
  recA Neisseria gonorrhoeae MS11

68.519

92.837

0.636
  recA Neisseria gonorrhoeae strain FA1090

68.519

92.837

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.74

89.112

0.63
  recA Helicobacter pylori 26695

60.294

97.421

0.587
  recA Helicobacter pylori strain NCTC11637

60

97.421

0.585
  recA Streptococcus pneumoniae R6

61.92

92.55

0.573
  recA Streptococcus pneumoniae Rx1

61.92

92.55

0.573
  recA Streptococcus pneumoniae D39

61.92

92.55

0.573
  recA Streptococcus pneumoniae TIGR4

61.92

92.55

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.162

93.696

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.977

0.573
  recA Streptococcus mitis NCTC 12261

61.61

92.55

0.57
  recA Streptococcus mitis SK321

61.3

92.55

0.567
  recA Streptococcus pyogenes NZ131

60.615

93.123

0.564
  recA Streptococcus mutans UA159

60.615

93.123

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.429

93.41

0.564
  recA Lactococcus lactis subsp. cremoris KW2

58.683

95.702

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

94.842

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

91.977

0.556