Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   KNV97_RS16055 Genome accession   NZ_CP076643
Coordinates   2178528..2179460 (-) Length   310 a.a.
NCBI ID   WP_407701911.1    Uniprot ID   -
Organism   Vibrio ostreae strain OG9-811     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2173528..2184460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS16040 (KNV97_16040) recA 2173966..2175015 (-) 1050 WP_136483310.1 recombinase RecA Machinery gene
  KNV97_RS16045 (KNV97_16045) pncC 2175187..2175675 (-) 489 WP_218562314.1 nicotinamide-nucleotide amidase -
  KNV97_RS16050 (KNV97_16050) mutS 2175762..2178323 (+) 2562 WP_218562315.1 DNA mismatch repair protein MutS -
  KNV97_RS16055 (KNV97_16055) rpoS 2178528..2179460 (-) 933 WP_407701911.1 RNA polymerase sigma factor RpoS Regulator
  KNV97_RS16060 (KNV97_16060) - 2179590..2180561 (-) 972 WP_256612128.1 peptidoglycan DD-metalloendopeptidase family protein -
  KNV97_RS16065 (KNV97_16065) - 2180612..2181238 (-) 627 WP_136483305.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  KNV97_RS16070 (KNV97_16070) surE 2181231..2182010 (-) 780 WP_136483304.1 5'/3'-nucleotidase SurE -
  KNV97_RS16075 (KNV97_16075) truD 2182076..2183122 (-) 1047 WP_218562317.1 tRNA pseudouridine(13) synthase TruD -
  KNV97_RS16080 (KNV97_16080) ispF 2183169..2183645 (-) 477 WP_218562318.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 310 a.a.        Molecular weight: 35710.41 Da        Isoelectric Point: 4.5864

>NTDB_id=576823 KNV97_RS16055 WP_407701911.1 2178528..2179460(-) (rpoS) [Vibrio ostreae strain OG9-811]
MNAAEAEEQLTNSKDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVK
ISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARE
LSQKLDHEPTAEEIALELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSDPEVSTQDDDIRDSLVAWLD
ELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNMESLFNVENEQ

Nucleotide


Download         Length: 933 bp        

>NTDB_id=576823 KNV97_RS16055 WP_407701911.1 2178528..2179460(-) (rpoS) [Vibrio ostreae strain OG9-811]
ATGAATGCCGCGGAAGCTGAAGAACAACTCACTAACAGTAAAGACCAATCTGAAGAGATTCGCGAAGAATTTGACGCATC
GACGAAGAGTCTGGATGCCACTCAGATGTATCTGAGTGAGATTGGTTTCTCACCACTTTTAACCGCCGAAGAAGAAGTTT
TGTATGCCCGTCGTGCTCTGCGCGGCGATGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTGCGCCTGGTGGTCAAG
ATCTCACGCCGTTACAGCAATCGTGGTCTGGCTCTGCTTGATCTGATTGAAGAAGGCAACCTGGGTCTGATCCGTGCGGT
GGAAAAATTTGATCCGGAACGCGGCTTCCGTTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATTGAACGTGCGC
TGATGAACCAGACCCGTACCATTCGTCTGCCGATTCACGTCGTCAAAGAGCTCAACATTTACCTGCGTACTGCGCGTGAA
CTGTCGCAAAAACTCGATCACGAGCCAACGGCAGAAGAGATCGCACTGGAGCTGGATAAACCGGTGGATGATGTCAGTAA
AATGCTGCGCCTCAATGAGCGTATCAGCTCAGTGGATACGCCGATTGGTGGTGACGGCGACAAAGCGCTGCTCGACATTA
TTCCGGACATCAACAACTCGGACCCGGAAGTCTCGACTCAGGACGATGACATCCGTGACTCACTGGTTGCCTGGCTGGAT
GAACTGAATCCGAAACAGAAAGAAGTGCTGGCGCGCCGTTTTGGCCTGCTCGGTTATGAACCTTCTACGCTGGAAGAAGT
CGGTCGCGAAATTAACCTGACCCGTGAGCGGGTACGTCAGATCCAGGTCGAAGGCCTGCGTCGTCTGCGTGAAATCCTGA
TGAAACAGGGTCTGAATATGGAATCGCTGTTTAACGTAGAAAACGAGCAATAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(32-65)

Sigma-70 region 3 (Sigma70_r3)

(150-223)

Sigma-70 region 2 (Sigma70_r2)

(70-139)

Sigma-70, region 4 (Sigma70_r4)

(238-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

91.391

97.419

0.89