Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KI608_RS20015 Genome accession   NZ_CP075192
Coordinates   4160643..4161674 (-) Length   343 a.a.
NCBI ID   WP_226449355.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 132     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4155643..4166674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI608_RS19980 (KI608_19920) - 4155904..4156158 (-) 255 WP_226449342.1 hypothetical protein -
  KI608_RS19985 (KI608_19925) hprK 4156207..4157142 (-) 936 WP_226449343.1 HPr(Ser) kinase/phosphatase -
  KI608_RS19990 (KI608_19930) ptsN 4157152..4157598 (-) 447 WP_226449345.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KI608_RS19995 (KI608_19935) hpf 4157649..4157975 (-) 327 WP_226449347.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KI608_RS20000 (KI608_19940) rpoN/rpoN1 4157991..4159460 (-) 1470 WP_226449349.1 RNA polymerase factor sigma-54 Machinery gene
  KI608_RS20005 (KI608_19945) lptB 4159488..4160222 (-) 735 WP_226449351.1 LPS export ABC transporter ATP-binding protein -
  KI608_RS20010 (KI608_19950) recX 4160219..4160650 (-) 432 WP_226449353.1 recombination regulator RecX -
  KI608_RS20015 (KI608_19955) recA 4160643..4161674 (-) 1032 WP_226449355.1 recombinase RecA Machinery gene
  KI608_RS20020 (KI608_19960) - 4161856..4162047 (+) 192 WP_226449357.1 hypothetical protein -
  KI608_RS20025 (KI608_19965) - 4162050..4162706 (+) 657 WP_226449359.1 RluA family pseudouridine synthase -
  KI608_RS20030 (KI608_19970) - 4162778..4164325 (+) 1548 WP_226449361.1 sodium:solute symporter family protein -
  KI608_RS20035 (KI608_19975) - 4164462..4165517 (+) 1056 WP_226449363.1 VanZ family protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36597.23 Da        Isoelectric Point: 6.5154

>NTDB_id=568615 KI608_RS20015 WP_226449355.1 4160643..4161674(-) (recA) [Ferribacterium limneticum strain 132]
MDDNKAKALAAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVV
AEMQKLGGTAAFIDAEHALDPQYAQKLGVNVGDLLISQPDTGEQALEIADMLVRSGSVDIIVVDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGS
ETKVKVVKNKVAPPFREAIFDILYGEGISRHGEIVEMGVAHKLVDKSGAWYAYKGEKIGQGKDNAREFLRANPEIAQEIE
AAIREAASTNVIKPVKAAKAADA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=568615 KI608_RS20015 WP_226449355.1 4160643..4161674(-) (recA) [Ferribacterium limneticum strain 132]
ATGGACGACAACAAGGCAAAAGCGCTCGCCGCAGCGCTGCAACAGATCGAAAAGCAATTCGGCAAAGGCTCCATCATGAA
GATGGGCGATGCCGAAATCGACGAAGGCATTCAGGTCGTGTCTACCGGTTCGCTCGGTCTGGACATTGCGCTTGGCGTTG
GCGGCCTGCCGCGCGGTCGCGTCGTTGAAATCTATGGTCCGGAATCCTCCGGCAAGACCACGCTCTGCCTGCAGGTCGTG
GCCGAAATGCAGAAGCTGGGCGGCACGGCGGCCTTCATCGACGCCGAACACGCGCTCGATCCGCAATACGCCCAGAAGCT
CGGCGTCAATGTCGGCGACCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCCCTCGAAATCGCCGACATGCTGGTCC
GTTCCGGCTCGGTCGACATCATCGTCGTCGACTCGGTCGCCGCCCTCACCCCGCGCGCCGAAATCGAAGGCGAAATGGGC
GACCAGATGGTCGGCCTGCACGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCGCCAACATCAAGAAGACCAACAC
GCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCTCGCCGGAAACGACCACCGGCGGCAATG
CACTCAAGTTCTACGCTTCGGTTCGCCTCGACATCCGCCGCATCGGCGCAATCAAGAAGGGCGACGAAGTCATCGGCAGC
GAAACCAAGGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCCTTCCGCGAAGCCATCTTCGACATCCTCTACGGCGAAGG
CATTTCCCGCCATGGCGAAATCGTCGAAATGGGCGTCGCCCACAAGCTGGTCGACAAATCCGGCGCCTGGTACGCCTACA
AGGGCGAAAAGATTGGCCAGGGCAAGGACAACGCTCGCGAATTCCTGCGCGCCAACCCGGAAATTGCCCAGGAAATCGAA
GCGGCGATCCGCGAGGCTGCCAGCACCAACGTGATCAAGCCGGTCAAGGCGGCCAAGGCTGCGGATGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.871

90.379

0.758
  recA Pseudomonas stutzeri DSM 10701

76.543

94.461

0.723
  recA Glaesserella parasuis strain SC1401

70.468

99.708

0.703
  recA Neisseria gonorrhoeae MS11

74.074

94.461

0.7
  recA Neisseria gonorrhoeae MS11

74.074

94.461

0.7
  recA Neisseria gonorrhoeae strain FA1090

74.074

94.461

0.7
  recA Acinetobacter baylyi ADP1

73.538

94.752

0.697
  recA Acinetobacter baumannii D1279779

71.125

95.918

0.682
  recA Vibrio cholerae strain A1552

69.846

94.752

0.662
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.846

94.752

0.662
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.565

95.918

0.638
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

95.335

0.627
  recA Bacillus subtilis subsp. subtilis str. 168

65.846

94.752

0.624
  recA Helicobacter pylori strain NCTC11637

62.84

96.501

0.606
  recA Helicobacter pylori 26695

62.538

96.501

0.604
  recA Latilactobacillus sakei subsp. sakei 23K

63.889

94.461

0.603
  recA Streptococcus mutans UA159

62.577

95.044

0.595
  recA Streptococcus pneumoniae Rx1

62.654

94.461

0.592
  recA Streptococcus mitis NCTC 12261

62.654

94.461

0.592
  recA Streptococcus pneumoniae D39

62.654

94.461

0.592
  recA Streptococcus pneumoniae R6

62.654

94.461

0.592
  recA Streptococcus pneumoniae TIGR4

62.654

94.461

0.592
  recA Streptococcus mitis SK321

62.346

94.461

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

94.752

0.583
  recA Streptococcus pyogenes NZ131

61.043

95.044

0.58
  recA Lactococcus lactis subsp. cremoris KW2

60.802

94.461

0.574