Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KI610_RS19720 Genome accession   NZ_CP075189
Coordinates   4098703..4099731 (-) Length   342 a.a.
NCBI ID   WP_226496633.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4093703..4104731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI610_RS19685 (KI610_19595) - 4093953..4094210 (-) 258 WP_226496628.1 hypothetical protein -
  KI610_RS19690 (KI610_19600) hprK 4094258..4095193 (-) 936 WP_226496629.1 HPr(Ser) kinase/phosphatase -
  KI610_RS19695 (KI610_19605) ptsN 4095203..4095649 (-) 447 WP_226496630.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KI610_RS19700 (KI610_19610) hpf 4095706..4096032 (-) 327 WP_226403128.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KI610_RS19705 (KI610_19615) rpoN/rpoN1 4096048..4097520 (-) 1473 WP_226496631.1 RNA polymerase factor sigma-54 Machinery gene
  KI610_RS19710 (KI610_19620) lptB 4097548..4098282 (-) 735 WP_404827441.1 LPS export ABC transporter ATP-binding protein -
  KI610_RS19715 (KI610_19625) recX 4098279..4098710 (-) 432 WP_226496632.1 recombination regulator RecX -
  KI610_RS19720 (KI610_19630) recA 4098703..4099731 (-) 1029 WP_226496633.1 recombinase RecA Machinery gene
  KI610_RS19725 (KI610_19635) - 4099790..4100170 (+) 381 WP_226496634.1 hypothetical protein -
  KI610_RS19730 (KI610_19640) - 4100164..4100820 (+) 657 WP_226498587.1 pseudouridine synthase -
  KI610_RS19735 (KI610_19645) - 4100891..4102432 (+) 1542 WP_226496635.1 sodium:solute symporter family protein -
  KI610_RS19740 (KI610_19650) - 4102569..4103627 (+) 1059 WP_226496636.1 VanZ family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36562.22 Da        Isoelectric Point: 6.5159

>NTDB_id=568543 KI610_RS19720 WP_226496633.1 4098703..4099731(-) (recA) [Ferribacterium limneticum strain 77]
MDDNKAKALAAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVV
AEMQKLGGVAAFIDAEHALDPQYAQKLGVSVGDLLISQPDTGEQALEIADMLVRSGSVDIIVIDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKKGDEVIGS
ETKVKVVKNKVAPPFREAIFDILYGEGISRQGEVVEMGVAHKLVEKSGAWYSYKGEKIGQGKDNSREFLKSHPEIAQEIE
AKIREVASTTVIKPTKAAAADA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=568543 KI610_RS19720 WP_226496633.1 4098703..4099731(-) (recA) [Ferribacterium limneticum strain 77]
ATGGACGACAACAAGGCAAAGGCGCTCGCCGCAGCGCTGCAACAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGAA
GATGGGCGACGCCGAAATCGACGAAGGCATTCAAGTCGTGTCTACCGGCTCGCTCGGTCTGGACATTGCGCTGGGCGTCG
GCGGCCTGCCACGCGGCCGCGTCGTTGAAATCTACGGTCCGGAATCTTCCGGCAAGACCACGCTCTGTCTGCAGGTCGTT
GCCGAAATGCAAAAGCTCGGCGGCGTTGCCGCCTTCATCGACGCCGAACATGCGCTCGATCCGCAATACGCCCAGAAGCT
CGGCGTCAGCGTCGGCGACCTGCTGATCTCGCAGCCCGATACCGGCGAACAGGCCCTTGAAATCGCCGACATGCTGGTTC
GTTCCGGCTCGGTCGACATCATCGTCATCGACTCGGTCGCCGCCCTCACGCCGCGCGCTGAAATCGAAGGCGAAATGGGC
GACCAGATGGTCGGCCTGCATGCCCGTCTGATGAGCCAGGCCCTGCGCAAGCTCACCGCCAACATCAAGAAGACCAATAC
GCTGGTCATCTTCATCAACCAGATCCGAATGAAAATCGGCGTCATGTTCGGTTCGCCGGAAACGACGACCGGCGGCAACG
CGCTCAAGTTCTACGCTTCGGTTCGCCTCGACATCCGCCGCATTGGTGCGATCAAGAAGGGCGACGAAGTCATCGGCAGC
GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCCCCGCCCTTCCGCGAAGCCATCTTCGACATTCTCTACGGCGAAGG
CATTTCCCGTCAGGGCGAAGTGGTCGAAATGGGCGTTGCCCACAAGCTGGTCGAAAAATCCGGCGCCTGGTATTCCTACA
AGGGCGAGAAGATCGGCCAGGGCAAGGACAATTCCCGCGAATTTCTGAAGTCGCACCCGGAAATCGCCCAGGAAATCGAA
GCGAAGATCCGCGAAGTGGCCAGCACCACCGTCATCAAGCCGACCAAGGCGGCTGCGGCGGATGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.871

90.643

0.76
  recA Pseudomonas stutzeri DSM 10701

71.387

100

0.722
  recA Neisseria gonorrhoeae MS11

74.691

94.737

0.708
  recA Neisseria gonorrhoeae MS11

74.691

94.737

0.708
  recA Neisseria gonorrhoeae strain FA1090

74.691

94.737

0.708
  recA Acinetobacter baylyi ADP1

72.923

95.029

0.693
  recA Glaesserella parasuis strain SC1401

69.501

99.708

0.693
  recA Acinetobacter baumannii D1279779

70.606

96.491

0.681
  recA Vibrio cholerae strain A1552

66.957

100

0.675
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.957

100

0.675
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.957

96.199

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.846

95.029

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

64.923

95.029

0.617
  recA Helicobacter pylori strain NCTC11637

62.5

98.246

0.614
  recA Helicobacter pylori 26695

62.202

98.246

0.611
  recA Latilactobacillus sakei subsp. sakei 23K

63.665

94.152

0.599
  recA Streptococcus pneumoniae R6

62.346

94.737

0.591
  recA Streptococcus pneumoniae Rx1

62.346

94.737

0.591
  recA Streptococcus pneumoniae D39

62.346

94.737

0.591
  recA Streptococcus pneumoniae TIGR4

62.346

94.737

0.591
  recA Streptococcus mutans UA159

61.963

95.322

0.591
  recA Streptococcus mitis NCTC 12261

61.728

94.737

0.585
  recA Streptococcus mitis SK321

61.42

94.737

0.582
  recA Streptococcus pyogenes NZ131

61.043

95.322

0.582
  recA Lactococcus lactis subsp. cremoris KW2

61.18

94.152

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

93.567

0.567