Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KI612_RS19535 Genome accession   NZ_CP075188
Coordinates   4120924..4121952 (-) Length   342 a.a.
NCBI ID   WP_226441725.1    Uniprot ID   -
Organism   Quatrionicoccus australiensis strain D9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4115924..4126952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI612_RS19500 (KI612_19550) - 4116166..4116426 (-) 261 WP_226441718.1 hypothetical protein -
  KI612_RS19505 (KI612_19555) hprK 4116475..4117410 (-) 936 WP_226441719.1 HPr(Ser) kinase/phosphatase -
  KI612_RS19510 (KI612_19560) ptsN 4117420..4117869 (-) 450 WP_226441720.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KI612_RS19515 (KI612_19565) hpf 4117921..4118244 (-) 324 WP_226441721.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KI612_RS19520 (KI612_19570) rpoN/rpoN1 4118259..4119725 (-) 1467 WP_226441722.1 RNA polymerase factor sigma-54 Machinery gene
  KI612_RS19525 (KI612_19575) lptB 4119754..4120491 (-) 738 WP_226441723.1 LPS export ABC transporter ATP-binding protein -
  KI612_RS19530 (KI612_19580) recX 4120488..4120931 (-) 444 WP_226441724.1 recombination regulator RecX -
  KI612_RS19535 (KI612_19585) recA 4120924..4121952 (-) 1029 WP_226441725.1 recombinase RecA Machinery gene
  KI612_RS19540 (KI612_19590) - 4122187..4122390 (+) 204 WP_226441726.1 hypothetical protein -
  KI612_RS19545 (KI612_19595) - 4122387..4123040 (+) 654 WP_226441727.1 RluA family pseudouridine synthase -
  KI612_RS19550 (KI612_19600) - 4123110..4124657 (+) 1548 WP_226441728.1 sodium:solute symporter family protein -
  KI612_RS19555 (KI612_19605) - 4124742..4125800 (+) 1059 WP_226441729.1 VanZ family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36559.16 Da        Isoelectric Point: 6.5159

>NTDB_id=568520 KI612_RS19535 WP_226441725.1 4120924..4121952(-) (recA) [Quatrionicoccus australiensis strain D9]
MDDNKAKALSAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVI
AEMQKLGGVAAFIDAEHALDPQYAQKLGVNVGDLLISQPDTGEQALEISDMLVRSGSVDIIVIDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGS
ETKVKVVKNKVSPPFREAIFDILYGEGISRHGEIVELGVAHKLVEKSGAWYSYKGEKIGQGKDNSREFLKANPEIAAEIE
AGIREAASTNVIKPVKAAKVDG

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=568520 KI612_RS19535 WP_226441725.1 4120924..4121952(-) (recA) [Quatrionicoccus australiensis strain D9]
ATGGACGACAACAAGGCAAAGGCGCTCAGCGCAGCGCTGCAACAGATTGAAAAGCAGTTCGGCAAAGGCTCCATCATGAA
GATGGGCGATGCCGAGATCGACGAAGGCATCCAGGTGGTTTCTACCGGTTCGCTCGGCTTGGATATCGCGTTGGGCGTCG
GCGGTCTGCCGCGCGGCCGCGTTGTCGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACGCTCTGTCTGCAGGTCATT
GCCGAAATGCAGAAGCTGGGCGGCGTTGCCGCCTTCATCGATGCCGAACACGCGCTCGATCCGCAATATGCCCAGAAGCT
CGGCGTCAATGTCGGTGACCTGCTGATCTCGCAGCCGGATACCGGCGAACAGGCCCTCGAAATTTCCGACATGCTGGTCC
GTTCCGGCTCGGTCGACATCATCGTCATCGACTCGGTCGCGGCGCTGACGCCGCGTGCCGAAATCGAAGGCGAAATGGGC
GACCAGATGGTCGGCCTGCACGCCCGCCTGATGAGCCAGGCACTGCGCAAGCTGACCGCCAACATCAAGAAGACCAACAC
CTTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGTTCGCCGGAAACGACGACCGGCGGCAATG
CGCTCAAGTTCTACGCTTCCGTGCGCCTCGACATCCGCCGCATCGGCTCGATCAAGAAGGGCGACGAGGTCATCGGCAGC
GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCCTTCCGCGAAGCCATTTTCGACATCCTGTACGGCGAAGG
CATTTCCCGCCACGGCGAAATCGTCGAACTCGGGGTTGCCCACAAGCTGGTCGAGAAATCCGGCGCCTGGTATTCCTACA
AGGGCGAAAAGATCGGTCAGGGCAAGGACAATTCCCGCGAATTCCTCAAGGCCAACCCGGAAATCGCTGCCGAGATCGAG
GCGGGCATCCGCGAAGCGGCCAGCACCAATGTCATCAAGCCGGTCAAGGCAGCCAAGGTTGATGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.723

97.076

0.784
  recA Pseudomonas stutzeri DSM 10701

75

94.737

0.711
  recA Neisseria gonorrhoeae strain FA1090

74.074

94.737

0.702
  recA Neisseria gonorrhoeae MS11

74.074

94.737

0.702
  recA Neisseria gonorrhoeae MS11

74.074

94.737

0.702
  recA Glaesserella parasuis strain SC1401

70.588

99.415

0.702
  recA Acinetobacter baylyi ADP1

73.231

95.029

0.696
  recA Acinetobacter baumannii D1279779

71.385

95.029

0.678
  recA Vibrio cholerae strain A1552

69.538

95.029

0.661
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.538

95.029

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.957

96.199

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.055

95.614

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

65.846

95.029

0.626
  recA Helicobacter pylori 26695

63.142

96.784

0.611
  recA Helicobacter pylori strain NCTC11637

62.84

96.784

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

62.037

94.737

0.588
  recA Streptococcus mutans UA159

61.35

95.322

0.585
  recA Streptococcus mitis SK321

61.42

94.737

0.582
  recA Streptococcus mitis NCTC 12261

61.42

94.737

0.582
  recA Streptococcus pneumoniae Rx1

61.42

94.737

0.582
  recA Streptococcus pneumoniae D39

61.42

94.737

0.582
  recA Streptococcus pneumoniae R6

61.42

94.737

0.582
  recA Streptococcus pneumoniae TIGR4

61.42

94.737

0.582
  recA Streptococcus pyogenes NZ131

59.816

95.322

0.57
  recA Lactococcus lactis subsp. cremoris KW2

59.568

94.737

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.076

92.398

0.564