Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KI612_RS19520 Genome accession   NZ_CP075188
Coordinates   4118259..4119725 (-) Length   488 a.a.
NCBI ID   WP_226441722.1    Uniprot ID   -
Organism   Quatrionicoccus australiensis strain D9     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4113259..4124725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI612_RS19490 (KI612_19540) ttcA 4114303..4115166 (+) 864 WP_226441716.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  KI612_RS19495 (KI612_19545) - 4115230..4116114 (+) 885 WP_226441717.1 adenylate/guanylate cyclase domain-containing protein -
  KI612_RS19500 (KI612_19550) - 4116166..4116426 (-) 261 WP_226441718.1 hypothetical protein -
  KI612_RS19505 (KI612_19555) hprK 4116475..4117410 (-) 936 WP_226441719.1 HPr(Ser) kinase/phosphatase -
  KI612_RS19510 (KI612_19560) ptsN 4117420..4117869 (-) 450 WP_226441720.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KI612_RS19515 (KI612_19565) hpf 4117921..4118244 (-) 324 WP_226441721.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KI612_RS19520 (KI612_19570) rpoN/rpoN1 4118259..4119725 (-) 1467 WP_226441722.1 RNA polymerase factor sigma-54 Machinery gene
  KI612_RS19525 (KI612_19575) lptB 4119754..4120491 (-) 738 WP_226441723.1 LPS export ABC transporter ATP-binding protein -
  KI612_RS19530 (KI612_19580) recX 4120488..4120931 (-) 444 WP_226441724.1 recombination regulator RecX -
  KI612_RS19535 (KI612_19585) recA 4120924..4121952 (-) 1029 WP_226441725.1 recombinase RecA Machinery gene
  KI612_RS19540 (KI612_19590) - 4122187..4122390 (+) 204 WP_226441726.1 hypothetical protein -
  KI612_RS19545 (KI612_19595) - 4122387..4123040 (+) 654 WP_226441727.1 RluA family pseudouridine synthase -
  KI612_RS19550 (KI612_19600) - 4123110..4124657 (+) 1548 WP_226441728.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 488 a.a.        Molecular weight: 55198.28 Da        Isoelectric Point: 5.0166

>NTDB_id=568519 KI612_RS19520 WP_226441722.1 4118259..4119725(-) (rpoN/rpoN1) [Quatrionicoccus australiensis strain D9]
MKPALQLKLSQHLALTPQLQQSIKLLQLSTVEMQQEIERYLLENPMLEREDEAGTESFGAAQQFDSPANETTRSEPTEER
ERDPREEREQEVPSAPSEVDDDRWASDAGTFTGAGRDEDDDSDSRDIHSAATSLREHLGWQLGMTQLSERDRSLVRFLIE
ALDDDGYLSATLEELWETLPPEYEIELEELEIALHHIQHFDPTGIGARSPSECLALQLKAMPADEVQALALAIVEKHLEL
LAARDFAKIRRLTACDDDELKAAQSLIVSLNPRPGARFSQTEARYITPDVMVRKLKGKWTAYINPDAYPRLRINRLYAEI
LSRQRRGNGNLTGQLQEARWLIKNVQQRFETIHRVTQAIVDRQRQFFEHGEVAMRPLVLREIADILGLHESTVSRVTSQK
YMATPRGIFELKYFFGSHVSTDTGGACSATAIRALIKQLISAEDGKKPLSDSQLSEILGQQGIVVARRTVAKYRESLNIP
PVNLRKTL

Nucleotide


Download         Length: 1467 bp        

>NTDB_id=568519 KI612_RS19520 WP_226441722.1 4118259..4119725(-) (rpoN/rpoN1) [Quatrionicoccus australiensis strain D9]
ATGAAGCCAGCTCTCCAACTAAAACTATCCCAGCATCTGGCACTGACGCCTCAGTTGCAGCAGTCGATCAAGCTATTGCA
GTTGTCGACGGTCGAGATGCAGCAGGAAATCGAGCGTTACCTGCTGGAAAATCCGATGCTGGAGCGCGAGGACGAGGCCG
GTACGGAATCCTTTGGGGCGGCGCAGCAATTCGATTCACCGGCCAACGAAACGACGCGCAGCGAACCGACTGAAGAGCGC
GAACGTGATCCGCGCGAGGAACGCGAGCAGGAAGTGCCGAGCGCACCTTCCGAAGTCGATGATGATCGCTGGGCTTCCGA
TGCCGGGACCTTTACCGGTGCCGGGCGTGATGAAGACGACGACAGCGATTCACGCGACATCCATTCGGCCGCCACCAGCC
TGCGCGAACATCTCGGCTGGCAGCTGGGCATGACCCAGCTCAGCGAACGCGATCGCAGCCTGGTCCGTTTCCTGATCGAA
GCGCTGGACGATGACGGCTATCTCTCGGCCACGCTTGAGGAGCTGTGGGAAACCCTGCCGCCGGAATACGAGATCGAGCT
CGAAGAGCTGGAAATCGCCCTGCACCACATCCAGCATTTCGATCCGACCGGGATCGGCGCGCGCAGCCCCAGCGAATGCC
TGGCGCTGCAATTGAAAGCGATGCCGGCCGACGAAGTACAGGCGCTTGCCCTGGCGATCGTCGAGAAGCATCTGGAACTG
CTCGCGGCGCGCGATTTTGCCAAAATTCGCCGGTTGACCGCCTGTGACGACGATGAACTGAAGGCGGCACAATCCCTGAT
CGTCAGCCTCAATCCGCGGCCGGGGGCGCGTTTCTCGCAGACCGAGGCGCGCTACATCACGCCGGACGTAATGGTCAGGA
AGCTCAAGGGCAAATGGACCGCCTACATCAATCCGGATGCCTACCCGCGCCTGCGCATCAACCGTCTGTATGCCGAGATT
CTGTCGAGACAGCGGCGCGGCAATGGCAACCTGACCGGCCAGTTGCAGGAAGCACGCTGGCTGATCAAGAACGTGCAGCA
GCGTTTCGAGACCATCCACCGCGTGACGCAGGCCATTGTCGATCGTCAGCGCCAGTTTTTCGAACATGGTGAAGTCGCCA
TGCGGCCGTTGGTCCTGCGCGAAATCGCCGATATTCTCGGTTTGCACGAGTCGACCGTCTCGCGCGTCACCAGCCAGAAA
TACATGGCGACGCCGCGCGGCATCTTTGAATTGAAATACTTTTTCGGCAGTCATGTGTCCACCGATACCGGTGGTGCCTG
TTCTGCCACCGCCATTCGCGCCCTGATCAAGCAATTGATCAGTGCCGAGGATGGCAAGAAGCCCTTGTCGGATAGTCAAT
TATCCGAAATACTAGGCCAGCAGGGAATTGTTGTAGCCCGACGCACGGTAGCCAAATATCGCGAGTCACTCAACATCCCG
CCGGTCAATTTACGCAAGACCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(332-486)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(126-317)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

56.859

100

0.586