Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KI614_RS16120 Genome accession   NZ_CP075187
Coordinates   3411849..3412877 (-) Length   342 a.a.
NCBI ID   WP_226406944.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3406849..3417877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI614_RS16085 (KI614_16030) - 3407082..3407345 (-) 264 WP_203468025.1 PsiF family protein -
  KI614_RS16090 (KI614_16035) hprK 3407396..3408331 (-) 936 WP_226406937.1 HPr(Ser) kinase/phosphatase -
  KI614_RS16095 (KI614_16040) ptsN 3408341..3408787 (-) 447 WP_226406938.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KI614_RS16100 (KI614_16045) hpf 3408842..3409165 (-) 324 WP_203468028.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KI614_RS16105 (KI614_16050) rpoN/rpoN1 3409181..3410650 (-) 1470 WP_226406939.1 RNA polymerase factor sigma-54 Machinery gene
  KI614_RS16110 (KI614_16055) lptB 3410679..3411416 (-) 738 WP_226406940.1 LPS export ABC transporter ATP-binding protein -
  KI614_RS16115 (KI614_16060) recX 3411413..3411856 (-) 444 WP_226406942.1 recombination regulator RecX -
  KI614_RS16120 (KI614_16065) recA 3411849..3412877 (-) 1029 WP_226406944.1 recombinase RecA Machinery gene
  KI614_RS16125 (KI614_16070) - 3413143..3413793 (+) 651 WP_226406946.1 pseudouridine synthase -
  KI614_RS16130 (KI614_16075) - 3413879..3415375 (+) 1497 WP_226406948.1 sodium:solute symporter family protein -
  KI614_RS16135 (KI614_16080) - 3415511..3416569 (+) 1059 WP_226406950.1 VanZ family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36519.11 Da        Isoelectric Point: 6.3026

>NTDB_id=568496 KI614_RS16120 WP_226406944.1 3411849..3412877(-) (recA) [Dechloromonas denitrificans strain 98]
MDDNKAKALAAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVV
AEMQKLGGTAAFIDAEHALDPQYAQKLGVNVGDLLISQPDTGEQALEIADMLVRSGSVDIIIVDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGGIKKGDEVIGS
ETKVKVVKNKVSPPFREAIFDILYGEGISRQGEIVEMGVAHKLVDKSGAWYAYKGEKIGQGKDNAREFLRANPEIAQEIE
AGIREAASTNVIKPVKAAKADA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=568496 KI614_RS16120 WP_226406944.1 3411849..3412877(-) (recA) [Dechloromonas denitrificans strain 98]
ATGGACGACAACAAGGCAAAGGCGCTCGCCGCAGCGCTGCAACAGATCGAAAAGCAGTTCGGCAAAGGTTCCATCATGAA
GATGGGCGATGCTGAAATTGACGAAGGCATTCAGGTTGTCTCGACCGGTTCGCTCGGTCTGGACATCGCATTGGGCGTTG
GCGGTCTGCCGCGTGGCCGTGTAGTTGAAATCTACGGTCCGGAATCCTCAGGCAAGACGACGCTGTGTCTGCAGGTCGTT
GCCGAAATGCAAAAGCTCGGCGGTACTGCGGCCTTCATCGATGCCGAACATGCGCTCGATCCGCAATATGCCCAGAAGCT
TGGCGTCAATGTCGGCGACCTGCTGATCTCGCAGCCGGATACCGGCGAACAGGCGCTGGAAATCGCCGACATGCTGGTGC
GTTCCGGCTCGGTCGACATCATCATCGTCGACTCCGTCGCCGCCCTCACCCCGCGCGCCGAAATCGAAGGCGAGATGGGC
GACCAGATGGTCGGCCTGCACGCCCGCCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAATATCAAGAAGACCAACAC
GCTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGTTCGCCGGAAACCACCACCGGCGGCAATG
CCCTCAAGTTCTACGCTTCCGTCCGCCTCGACATCCGCCGTATCGGCGGCATCAAGAAGGGCGATGAAGTGATCGGCAGC
GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTTTCCCCGCCTTTCCGCGAAGCCATTTTCGACATCCTGTACGGCGAAGG
CATTTCCCGTCAGGGCGAAATTGTCGAAATGGGCGTCGCCCACAAGCTGGTCGACAAATCCGGTGCTTGGTACGCCTATA
AAGGCGAAAAAATCGGCCAGGGCAAGGACAACGCTCGCGAGTTCCTGCGTGCCAACCCCGAAATTGCCCAGGAAATCGAA
GCCGGCATTCGTGAGGCAGCCAGTACCAACGTCATCAAGCCGGTCAAGGCTGCCAAGGCTGATGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.226

90.643

0.754
  recA Pseudomonas stutzeri DSM 10701

76.235

94.737

0.722
  recA Glaesserella parasuis strain SC1401

70.381

99.708

0.702
  recA Neisseria gonorrhoeae MS11

73.457

94.737

0.696
  recA Neisseria gonorrhoeae MS11

73.457

94.737

0.696
  recA Neisseria gonorrhoeae strain FA1090

73.457

94.737

0.696
  recA Acinetobacter baylyi ADP1

72.923

95.029

0.693
  recA Acinetobacter baumannii D1279779

71.077

95.029

0.675
  recA Vibrio cholerae strain A1552

68.923

95.029

0.655
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.923

95.029

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.957

96.199

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

95.029

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

95.614

0.62
  recA Helicobacter pylori 26695

61.934

96.784

0.599
  recA Helicobacter pylori strain NCTC11637

61.934

96.784

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

63.272

94.737

0.599
  recA Streptococcus mutans UA159

61.963

95.322

0.591
  recA Streptococcus pneumoniae Rx1

62.037

94.737

0.588
  recA Streptococcus pneumoniae D39

62.037

94.737

0.588
  recA Streptococcus mitis NCTC 12261

62.037

94.737

0.588
  recA Streptococcus pneumoniae R6

62.037

94.737

0.588
  recA Streptococcus pneumoniae TIGR4

62.037

94.737

0.588
  recA Streptococcus mitis SK321

61.728

94.737

0.585
  recA Streptococcus pyogenes NZ131

60.429

95.322

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.185

94.737

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.398

0.567