Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KI614_RS16105 Genome accession   NZ_CP075187
Coordinates   3409181..3410650 (-) Length   489 a.a.
NCBI ID   WP_226406939.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 98     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404181..3415650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI614_RS16075 (KI614_16020) - 3404560..3405411 (+) 852 WP_226406935.1 adenylate/guanylate cyclase domain-containing protein -
  KI614_RS16080 (KI614_16025) - 3405512..3406984 (-) 1473 WP_226406936.1 IS1182 family transposase -
  KI614_RS16085 (KI614_16030) - 3407082..3407345 (-) 264 WP_203468025.1 PsiF family protein -
  KI614_RS16090 (KI614_16035) hprK 3407396..3408331 (-) 936 WP_226406937.1 HPr(Ser) kinase/phosphatase -
  KI614_RS16095 (KI614_16040) ptsN 3408341..3408787 (-) 447 WP_226406938.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KI614_RS16100 (KI614_16045) hpf 3408842..3409165 (-) 324 WP_203468028.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KI614_RS16105 (KI614_16050) rpoN/rpoN1 3409181..3410650 (-) 1470 WP_226406939.1 RNA polymerase factor sigma-54 Machinery gene
  KI614_RS16110 (KI614_16055) lptB 3410679..3411416 (-) 738 WP_226406940.1 LPS export ABC transporter ATP-binding protein -
  KI614_RS16115 (KI614_16060) recX 3411413..3411856 (-) 444 WP_226406942.1 recombination regulator RecX -
  KI614_RS16120 (KI614_16065) recA 3411849..3412877 (-) 1029 WP_226406944.1 recombinase RecA Machinery gene
  KI614_RS16125 (KI614_16070) - 3413143..3413793 (+) 651 WP_226406946.1 pseudouridine synthase -
  KI614_RS16130 (KI614_16075) - 3413879..3415375 (+) 1497 WP_226406948.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 55365.50 Da        Isoelectric Point: 5.1443

>NTDB_id=568495 KI614_RS16105 WP_226406939.1 3409181..3410650(-) (rpoN/rpoN1) [Dechloromonas denitrificans strain 98]
MKPALQLKLSQHLALTPQLQQSIKLLQLSTIEMQQEIERYLLENPMLERDDDAGTESYSSAQQFDAPKSDEGEREQRAER
DERDAREEREQDIPSAPSDVDDDRWSSDAGTYTGAGRDEDDDSDSHDIHAATTSLRDHLGWQLGMTQLSDRDRSLVRFLI
EALDDDGYLSASLDELWETLPPEYEIELEELEIALRHIQSFDPTGIGARGPKECLALQLKVLPENPVRNLALTIVEQHLE
LLAARDFAKIRRLTDCEDPALKAAHSLIVSLDPRPGARFAAIEARYITPDVMVRKLKGKWTAYINPDAYPRLRINRLYAE
ILSRQRRGNGNMTGQLQEARWLIKNVQQRFETIHRVTQAIVDRQRQFFEHGEVAMRPLVLREIADILGLHESTVSRVTSQ
KYMATPRGIFELKYFFGSHVATDTGGACSATAIRALIKQLIGAEDGKKPLSDSQLSEILGQQGIVVARRTVAKYRESLNI
PPVNLRKTL

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=568495 KI614_RS16105 WP_226406939.1 3409181..3410650(-) (rpoN/rpoN1) [Dechloromonas denitrificans strain 98]
ATGAAACCGGCTCTTCAACTCAAGCTTTCCCAGCATCTGGCCCTGACGCCACAGTTGCAGCAATCAATCAAATTGCTGCA
ACTATCGACGATCGAGATGCAGCAGGAAATCGAGCGCTATCTGCTTGAAAATCCGATGCTCGAACGGGATGATGATGCCG
GAACGGAGTCTTATTCTTCGGCCCAGCAATTCGATGCGCCAAAGAGCGACGAAGGGGAGCGCGAACAGCGGGCTGAGCGC
GATGAACGGGATGCGCGTGAAGAGCGCGAGCAGGATATCCCGAGTGCGCCATCCGACGTCGATGACGATCGCTGGTCATC
CGATGCCGGTACCTATACCGGGGCTGGTCGCGATGAGGACGATGACAGCGACAGCCACGACATCCATGCCGCAACAACCA
GTTTGCGCGATCACCTTGGCTGGCAATTGGGCATGACCCAGCTGTCGGACCGGGATCGCAGCCTGGTGCGTTTCCTGATC
GAAGCGCTTGATGATGATGGCTATCTCTCGGCGTCTCTCGACGAGCTGTGGGAAACCCTGCCGCCCGAGTATGAAATCGA
GCTGGAGGAGCTGGAAATTGCGCTTCGCCATATCCAGAGTTTCGATCCGACAGGTATCGGTGCGCGTGGGCCGAAAGAAT
GCCTCGCCCTGCAACTGAAGGTTTTGCCGGAAAACCCGGTGCGCAACCTGGCGCTGACCATTGTCGAGCAACACCTTGAA
TTACTCGCTGCCCGCGACTTTGCCAAAATCCGTCGTCTGACGGATTGCGAAGATCCCGCCCTGAAAGCGGCACACAGCTT
GATCGTCAGCCTTGATCCTCGCCCAGGCGCACGTTTTGCAGCCATTGAAGCGCGCTATATCACCCCGGACGTGATGGTTC
GCAAGCTCAAGGGAAAGTGGACGGCTTATATCAATCCGGATGCCTATCCGCGTTTGCGGATCAATCGGTTGTACGCTGAA
ATCCTGTCACGCCAGCGTCGAGGAAACGGCAACATGACCGGCCAGCTGCAGGAAGCACGCTGGCTGATCAAGAATGTTCA
GCAACGGTTTGAAACGATTCACCGTGTTACCCAGGCGATCGTCGATCGTCAGCGCCAGTTTTTCGAGCATGGCGAAGTGG
CGATGCGTCCGCTCGTGCTGCGCGAGATTGCCGATATTCTCGGTTTGCACGAGTCGACCGTGTCACGCGTTACCAGCCAG
AAATACATGGCCACGCCGCGCGGTATCTTTGAATTGAAATACTTTTTTGGCAGTCACGTTGCCACCGATACCGGTGGTGC
GTGTTCTGCAACGGCCATCCGGGCACTGATCAAACAACTGATCGGCGCAGAAGATGGCAAGAAGCCCTTGTCGGATAGCC
AATTATCCGAAATACTAGGCCAGCAGGGAATCGTTGTAGCCCGACGCACAGTAGCCAAATACCGTGAATCGCTTAACATC
CCGCCGGTCAATTTACGCAAGACCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(127-318)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(334-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.371

100

0.589