Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KI611_RS21845 Genome accession   NZ_CP075185
Coordinates   4579784..4580812 (-) Length   342 a.a.
NCBI ID   WP_226417757.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4574784..4585812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI611_RS21815 (KI611_21770) hprK 4575348..4576283 (-) 936 WP_226417751.1 HPr(Ser) kinase/phosphatase -
  KI611_RS21820 (KI611_21775) ptsN 4576293..4576739 (-) 447 WP_226417752.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KI611_RS21825 (KI611_21780) hpf 4576794..4577117 (-) 324 WP_226417753.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KI611_RS21830 (KI611_21785) rpoN/rpoN1 4577132..4578601 (-) 1470 WP_226417754.1 RNA polymerase factor sigma-54 Machinery gene
  KI611_RS21835 (KI611_21790) lptB 4578629..4579363 (-) 735 WP_226417755.1 LPS export ABC transporter ATP-binding protein -
  KI611_RS21840 (KI611_21795) recX 4579360..4579791 (-) 432 WP_226417756.1 recombination regulator RecX -
  KI611_RS21845 (KI611_21800) recA 4579784..4580812 (-) 1029 WP_226417757.1 recombinase RecA Machinery gene
  KI611_RS21850 (KI611_21805) - 4581025..4581261 (+) 237 WP_226417758.1 hypothetical protein -
  KI611_RS21855 (KI611_21810) - 4581249..4581911 (+) 663 WP_226417759.1 RluA family pseudouridine synthase -
  KI611_RS21860 (KI611_21815) - 4581972..4583468 (+) 1497 WP_226417760.1 sodium:solute symporter family protein -
  KI611_RS21865 (KI611_21820) - 4583484..4584536 (+) 1053 WP_226417761.1 VanZ family protein -
  KI611_RS21870 (KI611_21825) - 4584591..4584899 (+) 309 WP_226417762.1 (2Fe-2S) ferredoxin domain-containing protein -
  KI611_RS21875 (KI611_21830) - 4584896..4585534 (+) 639 WP_226417763.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36655.25 Da        Isoelectric Point: 6.6609

>NTDB_id=568452 KI611_RS21845 WP_226417757.1 4579784..4580812(-) (recA) [Dechloromonas denitrificans strain 110]
MDDNKAKALSAALQQIEKQFGKGSIMKMGDAEIDEGIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTLCLQVI
AEMQKLGGVAAFIDAEHALDPQYAQKLGVNVGDLLISQPDTGEQALEISDMLVRSGSVDIIVIDSVAALTPRAEIEGEMG
DQMVGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVIGS
ETKVKVVKNKVSPPFREAIFDILYGEGISRHGEIVELGVAHKLVEKSGAWYSYKGEKIGQGKDNSREFLKAHPEIAQEIE
AGIREAASTNVIKPVKAAKTDA

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=568452 KI611_RS21845 WP_226417757.1 4579784..4580812(-) (recA) [Dechloromonas denitrificans strain 110]
ATGGACGACAACAAGGCAAAGGCGCTCAGCGCAGCGCTGCAACAGATTGAAAAGCAGTTCGGCAAAGGCTCCATCATGAA
GATGGGCGATGCCGAGATCGATGAAGGCATCCAGGTGGTATCCACCGGTTCGCTCGGCTTGGATATCGCGTTGGGCGTCG
GCGGTCTGCCGCGCGGCCGGGTGGTCGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACGCTCTGTCTGCAGGTCATT
GCCGAAATGCAGAAACTGGGCGGCGTCGCTGCCTTCATCGACGCCGAACACGCGCTCGATCCGCAATACGCCCAGAAGCT
CGGCGTCAATGTCGGTGACCTGTTGATCTCGCAGCCGGATACCGGCGAGCAGGCTCTCGAAATCTCCGACATGCTGGTGC
GTTCCGGTTCGGTCGACATCATCGTCATCGACTCGGTCGCCGCCCTCACCCCGCGCGCTGAAATCGAAGGCGAAATGGGC
GACCAGATGGTCGGCCTGCACGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTAACCGCCAACATCAAGAAGACCAACAC
GCTGGTCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCTCGCCGGAAACGACGACCGGCGGCAATG
CGCTGAAGTTCTACGCGTCCGTTCGCCTCGACATCCGCCGTATCGGCTCGATCAAGAAGGGTGACGAGGTGATCGGCAGC
GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTGTCGCCACCCTTCCGCGAAGCCATTTTTGACATCCTGTACGGCGAAGG
CATTTCCCGCCATGGCGAAATCGTCGAACTCGGGGTAGCCCACAAACTGGTCGAGAAATCCGGCGCCTGGTATTCCTACA
AGGGCGAAAAAATCGGCCAGGGCAAGGACAATTCCCGCGAATTCCTCAAGGCACATCCGGAAATCGCCCAGGAAATCGAG
GCCGGTATCCGCGAAGCTGCCAGCACCAACGTCATCAAGCCGGTCAAAGCGGCCAAGACTGATGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.422

97.076

0.781
  recA Pseudomonas stutzeri DSM 10701

75

94.737

0.711
  recA Glaesserella parasuis strain SC1401

70.088

99.708

0.699
  recA Neisseria gonorrhoeae strain FA1090

73.765

94.737

0.699
  recA Neisseria gonorrhoeae MS11

73.765

94.737

0.699
  recA Neisseria gonorrhoeae MS11

73.765

94.737

0.699
  recA Acinetobacter baylyi ADP1

72.923

95.029

0.693
  recA Acinetobacter baumannii D1279779

71.077

95.029

0.675
  recA Vibrio cholerae strain A1552

69.231

95.029

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.231

95.029

0.658
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.653

96.199

0.632
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

95.614

0.629
  recA Bacillus subtilis subsp. subtilis str. 168

65.538

95.029

0.623
  recA Helicobacter pylori 26695

63.142

96.784

0.611
  recA Helicobacter pylori strain NCTC11637

62.84

96.784

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

62.346

94.737

0.591
  recA Streptococcus pneumoniae D39

61.728

94.737

0.585
  recA Streptococcus pneumoniae R6

61.728

94.737

0.585
  recA Streptococcus pneumoniae TIGR4

61.728

94.737

0.585
  recA Streptococcus pneumoniae Rx1

61.728

94.737

0.585
  recA Streptococcus mutans UA159

61.043

95.322

0.582
  recA Streptococcus mitis NCTC 12261

61.111

94.737

0.579
  recA Streptococcus mitis SK321

60.802

94.737

0.576
  recA Streptococcus pyogenes NZ131

60.123

95.322

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.877

94.737

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.392

92.398

0.567