Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KI611_RS21830 Genome accession   NZ_CP075185
Coordinates   4577132..4578601 (-) Length   489 a.a.
NCBI ID   WP_226417754.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 110     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4572132..4583601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI611_RS21805 (KI611_21760) ttcA 4573405..4574268 (+) 864 WP_226417749.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  KI611_RS21810 (KI611_21765) - 4574333..4575235 (+) 903 WP_226417750.1 adenylate/guanylate cyclase domain-containing protein -
  KI611_RS21815 (KI611_21770) hprK 4575348..4576283 (-) 936 WP_226417751.1 HPr(Ser) kinase/phosphatase -
  KI611_RS21820 (KI611_21775) ptsN 4576293..4576739 (-) 447 WP_226417752.1 PTS IIA-like nitrogen regulatory protein PtsN -
  KI611_RS21825 (KI611_21780) hpf 4576794..4577117 (-) 324 WP_226417753.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  KI611_RS21830 (KI611_21785) rpoN/rpoN1 4577132..4578601 (-) 1470 WP_226417754.1 RNA polymerase factor sigma-54 Machinery gene
  KI611_RS21835 (KI611_21790) lptB 4578629..4579363 (-) 735 WP_226417755.1 LPS export ABC transporter ATP-binding protein -
  KI611_RS21840 (KI611_21795) recX 4579360..4579791 (-) 432 WP_226417756.1 recombination regulator RecX -
  KI611_RS21845 (KI611_21800) recA 4579784..4580812 (-) 1029 WP_226417757.1 recombinase RecA Machinery gene
  KI611_RS21850 (KI611_21805) - 4581025..4581261 (+) 237 WP_226417758.1 hypothetical protein -
  KI611_RS21855 (KI611_21810) - 4581249..4581911 (+) 663 WP_226417759.1 RluA family pseudouridine synthase -
  KI611_RS21860 (KI611_21815) - 4581972..4583468 (+) 1497 WP_226417760.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 54927.06 Da        Isoelectric Point: 4.9970

>NTDB_id=568451 KI611_RS21830 WP_226417754.1 4577132..4578601(-) (rpoN/rpoN1) [Dechloromonas denitrificans strain 110]
MKPALQLKLSQHLALTPQLQQSIKLLQLSTIEMQQELERYLLENPMLERDDDQGSESFVGAQQFDAPQTSEGEREQRVER
EERDAREEREKDVPAAPSDVDDDRWASDAGTFTGAGRDDDDDSDAQDIHGGTISLRDHLGWQLGMTQLSERDRGLVRFLI
EALDDDGYLSSPLQELLETLPAEYEIELDDLEIALNYIQSFDPTGIGARSPQECLALQLKVLPPSAERTLALTIVEKHLE
LLAARDFAKIRRSTGCDDEALKAAHALITSLNPRPGADFAQVEARYITPDVIVKKLKGKWTAYINPDAYPRLRINRLYAE
ILARQRRGNGNLTGQLQEARWLIKNVQQRFETIHRVTQAIVDRQRQFFEHGEVAMRPLVLREIADILGLHESTVSRVTSQ
KYMATPRGIFELKYFFGSHVATDTGGACSATAIRALIKQLVGAEDGKKPLSDSQLSEILGQQGIVVARRTVAKYRESLSI
PPVNLRKTL

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=568451 KI611_RS21830 WP_226417754.1 4577132..4578601(-) (rpoN/rpoN1) [Dechloromonas denitrificans strain 110]
ATGAAGCCGGCACTCCAACTCAAACTCTCGCAGCACCTGGCCCTGACGCCGCAGTTGCAGCAGTCGATCAAGCTGCTGCA
GTTGTCGACTATCGAAATGCAGCAGGAACTCGAGCGCTATCTGCTTGAGAATCCGATGCTTGAGCGTGACGATGATCAAG
GCAGCGAGTCCTTCGTCGGCGCCCAGCAATTCGACGCCCCGCAAACCAGTGAAGGTGAGCGCGAGCAGCGCGTCGAACGC
GAGGAGCGGGATGCCCGCGAGGAGCGTGAAAAGGACGTTCCGGCCGCGCCTTCCGATGTCGACGATGATCGTTGGGCGTC
CGATGCCGGCACGTTTACCGGGGCCGGCCGCGATGATGACGATGACAGCGATGCCCAGGACATTCATGGCGGGACCATCA
GCCTGCGTGATCATTTGGGCTGGCAACTGGGCATGACCCAGCTCTCCGAGCGCGACCGCGGCCTGGTCCGTTTCCTGATC
GAGGCGCTCGACGACGATGGTTACCTCTCCTCGCCGCTGCAGGAACTGCTGGAAACGCTGCCGGCGGAATACGAAATCGA
GCTCGACGACCTCGAAATCGCGCTGAACTATATTCAGAGCTTCGACCCGACCGGTATCGGCGCCCGTAGCCCGCAGGAAT
GTCTCGCTTTGCAGCTGAAGGTCCTGCCGCCCAGCGCCGAGCGGACCCTGGCGCTGACCATCGTCGAAAAGCATCTCGAA
TTGCTGGCCGCCCGCGATTTTGCCAAGATTCGCCGGTCCACCGGCTGCGACGACGAGGCCCTGAAAGCGGCGCACGCTTT
GATTACCAGCCTGAATCCGAGGCCGGGAGCGGATTTTGCCCAGGTCGAGGCGCGCTATATCACGCCGGATGTGATCGTCA
AAAAGCTCAAGGGCAAATGGACGGCTTATATCAATCCGGACGCCTATCCGCGTTTGCGCATCAACCGTCTGTATGCCGAA
ATTCTTGCCCGGCAGCGCCGCGGTAACGGCAATCTGACCGGACAATTGCAGGAGGCGCGCTGGCTGATCAAGAACGTCCA
GCAGCGTTTCGAGACCATTCACCGCGTCACCCAGGCGATTGTCGATCGTCAGCGACAGTTCTTCGAGCATGGCGAAGTTG
CTATGCGTCCGCTGGTGTTGCGCGAAATTGCCGATATACTCGGGTTGCACGAGTCGACGGTATCCCGCGTTACCAGCCAG
AAATACATGGCAACGCCACGCGGCATTTTTGAATTGAAATACTTCTTCGGTAGCCATGTTGCTACCGATACTGGCGGAGC
CTGTTCCGCCACCGCCATTCGCGCACTGATCAAGCAGTTGGTCGGAGCCGAGGATGGCAAGAAGCCCTTGTCGGATAGTC
AATTATCCGAAATACTAGGCCAGCAGGGAATCGTTGTAGCAAGACGTACGGTTGCAAAATACCGTGAGTCGCTCAGCATC
CCGCCGGTCAATTTACGCAAGACCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-318)

Sigma-54, DNA binding domain (Sigma54_DBD)

(333-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.57

100

0.591