Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AZKH_RS21430 Genome accession   NC_020516
Coordinates   4768224..4769261 (+) Length   345 a.a.
NCBI ID   WP_015437899.1    Uniprot ID   H0PWV0
Organism   Azoarcus sp. KH32C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4763224..4774261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZKH_RS21410 (AZKH_4318) - 4764046..4766022 (-) 1977 WP_015437895.1 flagellar assembly protein A -
  AZKH_RS21415 (AZKH_4319) thiL 4766187..4767146 (+) 960 WP_015437896.1 thiamine-phosphate kinase -
  AZKH_RS21420 (AZKH_4320) - 4767174..4767674 (+) 501 WP_015437897.1 phosphatidylglycerophosphatase A -
  AZKH_RS21425 (AZKH_4321) - 4767659..4768147 (+) 489 WP_015437898.1 CinA family protein -
  AZKH_RS21430 (AZKH_4322) recA 4768224..4769261 (+) 1038 WP_015437899.1 recombinase RecA Machinery gene
  AZKH_RS21435 (AZKH_4323) recX 4769272..4769721 (+) 450 WP_015437900.1 recombination regulator RecX -
  AZKH_RS21440 (AZKH_4324) lptB 4769708..4770430 (+) 723 WP_015437901.1 LPS export ABC transporter ATP-binding protein -
  AZKH_RS21445 (AZKH_4325) rpoN/rpoN1 4770452..4771885 (+) 1434 WP_015437902.1 RNA polymerase factor sigma-54 Machinery gene
  AZKH_RS21450 (AZKH_4326) hpf 4771903..4772226 (+) 324 WP_015437903.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AZKH_RS21455 (AZKH_4327) ptsN 4772361..4772846 (+) 486 WP_041656475.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AZKH_RS21460 (AZKH_4328) hprK 4772815..4773756 (+) 942 WP_015437905.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37086.60 Da        Isoelectric Point: 5.5880

>NTDB_id=56730 AZKH_RS21430 WP_015437899.1 4768224..4769261(+) (recA) [Azoarcus sp. KH32C]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNIQDLLISQPDTGEQALEIADMLVRSGGVDIVVVDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKKGDEVVGN
ETRVKVVKNKVSPPFRETEFDILYGEGISREGEIIDLGVLHKIVDKAGAWYSYKGDKIGQGKDNTREFLRANPALAREIE
NRVRVAVGLKEMPVEAEPPQASQAA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=56730 AZKH_RS21430 WP_015437899.1 4768224..4769261(+) (recA) [Azoarcus sp. KH32C]
ATGGACGACAACAAGGCCAAGGCCCTCGCCGCCGCGCTCTCGCAGATCGAGAAGCAGTTCGGCAAGGGTTCGATCATGCG
GATGGGCGACGGCAACGTCGAAAAAGACATCCAGACCGTCTCGACCGGCTCGCTCGGGCTCGACATCGCACTCGGCCTCG
GCGGCCTGCCGCGCGGCCGGGTCGTCGAGATCTACGGCCCGGAATCCTCCGGCAAGACGACGCTCACGCTGCAAGTCATC
GCCGAGATGCAGAAGCTCGGCGGCACCGCCGCGTTCATCGACGCCGAGCACGCGCTCGACGTCGGCTACGCCGAGAAGCT
CGGCGTCAATATCCAGGATCTGCTGATCTCGCAACCGGATACCGGCGAACAGGCGCTCGAGATCGCCGACATGCTCGTCC
GCTCGGGCGGTGTCGACATCGTCGTCGTCGACTCGGTCGCGGCGCTGACGCCGAAGGCCGAAATCGAAGGCGAAATGGGC
GACCAGCTCCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAACTCACCGCCAACATCAAGCGCACGAACAC
GCTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACG
CGCTGAAGTTCTACGCCTCGGTGCGCCTCGACATCCGTCGCATCGGCTCGATCAAGAAGGGCGACGAGGTCGTCGGCAAC
GAAACCCGCGTCAAGGTCGTCAAGAACAAGGTCTCGCCCCCATTCCGCGAAACCGAGTTCGACATCCTCTACGGCGAAGG
CATCTCGCGCGAAGGTGAGATCATCGATCTGGGCGTGCTGCACAAGATCGTGGACAAGGCCGGCGCGTGGTACTCGTATA
AGGGCGACAAGATCGGCCAGGGCAAGGACAACACGCGCGAATTCCTGCGCGCCAACCCGGCCCTCGCACGCGAGATCGAA
AACCGGGTGCGCGTCGCGGTCGGCCTGAAGGAAATGCCGGTCGAAGCCGAACCCCCGCAGGCCTCGCAAGCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H0PWV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.596

91.884

0.768
  recA Pseudomonas stutzeri DSM 10701

72.485

97.971

0.71
  recA Acinetobacter baylyi ADP1

73.765

93.913

0.693
  recA Neisseria gonorrhoeae MS11

72.121

95.652

0.69
  recA Neisseria gonorrhoeae MS11

72.121

95.652

0.69
  recA Neisseria gonorrhoeae strain FA1090

72.121

95.652

0.69
  recA Acinetobacter baumannii D1279779

72.84

93.913

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.531

93.913

0.681
  recA Vibrio cholerae strain A1552

72.531

93.913

0.681
  recA Glaesserella parasuis strain SC1401

70.807

93.333

0.661
  recA Helicobacter pylori 26695

64.809

98.841

0.641
  recA Helicobacter pylori strain NCTC11637

64.516

98.841

0.638
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.766

96.522

0.635
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.463

95.072

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

65.35

95.362

0.623
  recA Latilactobacillus sakei subsp. sakei 23K

61.905

97.391

0.603
  recA Streptococcus mitis SK321

61.702

95.362

0.588
  recA Streptococcus mitis NCTC 12261

61.702

95.362

0.588
  recA Streptococcus mutans UA159

60.661

96.522

0.586
  recA Streptococcus pneumoniae Rx1

61.398

95.362

0.586
  recA Streptococcus pneumoniae D39

61.398

95.362

0.586
  recA Streptococcus pneumoniae R6

61.398

95.362

0.586
  recA Streptococcus pneumoniae TIGR4

61.398

95.362

0.586
  recA Streptococcus pyogenes NZ131

60.303

95.652

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

93.913

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.021

94.783

0.559

Multiple sequence alignment