Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GHH_RS06045 Genome accession   NC_020210
Coordinates   1193230..1194045 (+) Length   271 a.a.
NCBI ID   WP_021322290.1    Uniprot ID   -
Organism   Geobacillus sp. GHH01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1188230..1199045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHH_RS06025 (GHH_c12170) - 1188977..1189870 (+) 894 WP_015374448.1 RodZ domain-containing protein -
  GHH_RS06030 (GHH_c12180) pgsA 1189951..1190529 (+) 579 WP_011230793.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GHH_RS06035 (GHH_c12190) cinA 1190556..1191800 (+) 1245 WP_015374449.1 competence/damage-inducible protein A Machinery gene
  GHH_RS06040 (GHH_c12200) - 1191978..1192265 (+) 288 Protein_1157 DNA recombination/repair protein RecA -
  GHH_RS06045 (GHH_c12210) recA 1193230..1194045 (+) 816 WP_021322290.1 recombinase RecA Machinery gene
  GHH_RS06050 (GHH_c12220) rny 1194420..1195976 (+) 1557 WP_011230797.1 ribonuclease Y -
  GHH_RS06055 (GHH_c12230) - 1196078..1196872 (+) 795 WP_011230798.1 TIGR00282 family metallophosphoesterase -
  GHH_RS06060 (GHH_c12240) spoVS 1197001..1197261 (+) 261 WP_003251598.1 stage V sporulation protein SpoVS -
  GHH_RS06065 (GHH_c12250) - 1197354..1198277 (+) 924 WP_015374450.1 dipeptidase -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 29695.82 Da        Isoelectric Point: 4.9902

>NTDB_id=55830 GHH_RS06045 WP_021322290.1 1193230..1194045(+) (recA) [Geobacillus sp. GHH01]
MKRGKIAPPGNAEGDYYLSLSLDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEG
EMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDM
VGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEILDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKENPHIAD
EIARAIRQHYGIDVEEGTSEPQQDGFGLLEE

Nucleotide


Download         Length: 816 bp        

>NTDB_id=55830 GHH_RS06045 WP_021322290.1 1193230..1194045(+) (recA) [Geobacillus sp. GHH01]
GTGAAGCGGGGGAAAATAGCCCCTCCGGGTAATGCCGAGGGTGACTATTACCTATCGCTATCGCTCGACCCCATCTATGC
ACAAAAATTAGGGGTCAATATCGATGAATTGCTGCTTTCCCAGCCTGACACGGGCGAGCAGGCGCTCGAAATCGCGGAAG
CGCTCGTGCGAAGCGGCGCGGTCGATATTATCGTCATCGACTCGGTGGCGGCGCTTGTGCCGAAAGCGGAAATTGAAGGG
GAGATGGGCGACGCCCATGTCGGCTTGCAAGCGCGGCTTATGTCCCAGGCGCTTCGCAAGCTGTCTGGCGCCATTAACAA
ATCGAAAACGATCGCCATCTTCATCAACCAAATTCGCGAAAAAGTCGGCGTCATGTTTGGCAATCCGGAAACGACGCCGG
GCGGGCGGGCGCTCAAGTTTTACGCTTCCGTCCGCCTAGAGGTGCGCCGCGCCGAGCAAATTAAGCAAGGCAATGATATG
GTCGGCAACAAGACAAAAATTAAAGTCGTCAAAAACAAAGTTGCGCCGCCATTTAAAACGGCTGACGTCGACATTATGTA
CGGCGAAGGCATTTCCCGCGAAGGGGAAATTCTCGACATGGCGTCCGAATTGGACATCGTGCAAAAAAGCGGTTCGTGGT
ATTCGTACAAAGACGAGCGGCTTGGCCAAGGGCGGGAAAACGCGAAGCAATTTTTGAAGGAAAACCCGCACATCGCCGAT
GAGATCGCCCGCGCCATCCGCCAGCATTACGGCATCGACGTTGAAGAGGGAACGAGCGAACCGCAGCAAGACGGGTTCGG
ATTGCTTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.124

85.978

0.749
  recA Latilactobacillus sakei subsp. sakei 23K

74.494

91.144

0.679
  recA Streptococcus pneumoniae D39

67.857

92.989

0.631
  recA Streptococcus pneumoniae R6

67.857

92.989

0.631
  recA Streptococcus pneumoniae Rx1

67.857

92.989

0.631
  recA Streptococcus pneumoniae TIGR4

67.857

92.989

0.631
  recA Streptococcus mitis NCTC 12261

68.548

91.513

0.627
  recA Streptococcus mitis SK321

67.742

91.513

0.62
  recA Streptococcus mutans UA159

67.886

90.775

0.616
  recA Streptococcus pyogenes NZ131

69.362

86.716

0.601
  recA Lactococcus lactis subsp. cremoris KW2

67.373

87.085

0.587
  recA Ralstonia pseudosolanacearum GMI1000

68.103

85.609

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.094

86.347

0.579
  recA Neisseria gonorrhoeae MS11

62.753

91.144

0.572
  recA Neisseria gonorrhoeae strain FA1090

62.753

91.144

0.572
  recA Neisseria gonorrhoeae MS11

62.753

91.144

0.572
  recA Vibrio cholerae strain A1552

65.789

84.133

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.789

84.133

0.554
  recA Pseudomonas stutzeri DSM 10701

65.639

83.764

0.55
  recA Acinetobacter baumannii D1279779

64.629

84.502

0.546
  recA Glaesserella parasuis strain SC1401

64.758

83.764

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.09

85.978

0.542
  recA Helicobacter pylori 26695

62.931

85.609

0.539
  recA Helicobacter pylori strain NCTC11637

62.931

85.609

0.539
  recA Acinetobacter baylyi ADP1

63.319

84.502

0.535
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.332

82.288

0.513

Multiple sequence alignment