Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GHH_RS06035 Genome accession   NC_020210
Coordinates   1190556..1191800 (+) Length   414 a.a.
NCBI ID   WP_015374449.1    Uniprot ID   L7ZXH3
Organism   Geobacillus sp. GHH01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1185556..1196800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GHH_RS06005 (GHH_c12130) yfmH 1185655..1186944 (+) 1290 WP_015374445.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  GHH_RS06010 (GHH_c12140) ymfI 1186999..1187715 (+) 717 WP_015374446.1 elongation factor P 5-aminopentanone reductase -
  GHH_RS06015 (GHH_c12150) - 1187778..1188026 (+) 249 WP_011230790.1 DUF3243 domain-containing protein -
  GHH_RS06020 (GHH_c12160) - 1188158..1188949 (+) 792 WP_015374447.1 DUF3388 domain-containing protein -
  GHH_RS06025 (GHH_c12170) - 1188977..1189870 (+) 894 WP_015374448.1 RodZ domain-containing protein -
  GHH_RS06030 (GHH_c12180) pgsA 1189951..1190529 (+) 579 WP_011230793.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GHH_RS06035 (GHH_c12190) cinA 1190556..1191800 (+) 1245 WP_015374449.1 competence/damage-inducible protein A Machinery gene
  GHH_RS06040 (GHH_c12200) - 1191978..1192265 (+) 288 Protein_1157 DNA recombination/repair protein RecA -
  GHH_RS06045 (GHH_c12210) recA 1193230..1194045 (+) 816 WP_021322290.1 recombinase RecA Machinery gene
  GHH_RS06050 (GHH_c12220) rny 1194420..1195976 (+) 1557 WP_011230797.1 ribonuclease Y -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44800.53 Da        Isoelectric Point: 6.0113

>NTDB_id=55829 GHH_RS06035 WP_015374449.1 1190556..1191800(+) (cinA) [Geobacillus sp. GHH01]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAMLGINVYFHTVVGDNAGRLEQAVKTAQTRANLIIFTGGLGPTKDDLTKET
IARLLGRRLVIDEEALRAIEAYFARTNRPMTENNKKQALVLEGSTVLKNEHGMAPGMALVADGITYMLLPGPPKEMRPMF
KKYGNAFLRRTFSLSERIESRVLRFFGIGESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHQDEAEAKRLLDEVE
AAILARVGRHCYGYNDETLFTKTLERLKERGWTIASAESLTGGLFLEQLTAIPGASQVVQGGVVCYTNGVKEQVLGIPRT
LLEAEGAVSEPCARLLAENVRAMCDADIGISFTGVAGPDPLEGHPPGTVYIGIAVRGRDATVHRLTLSGTRDAIRIRTAK
YGCFFLLEMLAADC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=55829 GHH_RS06035 WP_015374449.1 1190556..1191800(+) (cinA) [Geobacillus sp. GHH01]
TTGAACGCGGAGATCATTGCCGTTGGCTCCGAGCTGTTGCTTGGGCAAATCGCCAATACGAACGCCCAGTTTTTGTCGCA
GCAGCTGGCGATGCTTGGCATTAACGTCTATTTCCATACCGTCGTCGGCGACAACGCCGGCCGCCTCGAACAGGCGGTGA
AAACGGCGCAAACGAGAGCGAACCTCATCATTTTCACCGGCGGTCTCGGCCCGACGAAAGACGATTTAACGAAGGAGACG
ATCGCCCGTTTGCTTGGCCGCCGACTCGTGATCGACGAGGAAGCGCTCCGAGCGATTGAGGCGTATTTTGCCCGCACAAA
CCGGCCGATGACAGAAAACAATAAAAAGCAGGCGCTCGTCTTGGAAGGATCGACGGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTGTGGCAGACGGCATTACGTACATGTTGCTGCCCGGGCCGCCGAAAGAAATGCGGCCGATGTTC
AAAAAATACGGAAACGCCTTTTTGCGCCGTACGTTTTCGCTTTCCGAGCGCATCGAGTCGCGCGTGCTCCGCTTTTTTGG
CATCGGTGAATCAGCGCTCGAGACGGCGATTGCGGATTTGATCGACGCCCAGTCGAATCCGACGATCGCGCCGCTGGCCG
GCGACGGTGAAGTGACGCTTCGTCTGACAGCGAAGCATCAGGATGAGGCGGAGGCGAAGCGGCTTCTTGACGAAGTGGAA
GCGGCCATTTTGGCGCGCGTCGGCCGCCACTGCTACGGATATAACGATGAAACGTTGTTTACAAAGACGCTCGAGCGGTT
AAAAGAAAGAGGATGGACGATCGCGTCGGCCGAAAGTTTGACCGGCGGCCTTTTCCTCGAACAGCTCACCGCCATCCCCG
GCGCGTCTCAAGTCGTGCAGGGCGGTGTCGTCTGCTACACAAACGGCGTCAAAGAACAGGTGCTTGGCATACCGCGCACG
CTACTTGAGGCAGAAGGGGCGGTGAGCGAGCCGTGCGCCCGTTTGCTTGCTGAAAACGTCCGCGCGATGTGCGATGCGGA
TATCGGCATCAGCTTCACCGGCGTCGCCGGACCCGATCCGCTTGAGGGCCACCCGCCCGGCACCGTGTATATCGGCATCG
CCGTCCGCGGGCGCGATGCAACTGTCCACCGTCTGACGCTGTCCGGCACGCGTGATGCCATTCGCATCCGCACCGCCAAA
TACGGCTGTTTTTTTCTGCTTGAGATGCTCGCGGCCGACTGCTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L7ZXH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.902

98.792

0.592
  cinA Streptococcus mitis SK321

50.653

92.512

0.469
  cinA Streptococcus mitis NCTC 12261

50.653

92.512

0.469
  cinA Streptococcus pneumoniae TIGR4

50.392

92.512

0.466
  cinA Streptococcus pneumoniae Rx1

50.392

92.512

0.466
  cinA Streptococcus pneumoniae R6

50.392

92.512

0.466
  cinA Streptococcus pneumoniae D39

50.131

92.512

0.464
  cinA Streptococcus mutans UA159

47.87

96.377

0.461
  cinA Streptococcus suis isolate S10

42.593

91.304

0.389

Multiple sequence alignment