Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J9538_RS12425 Genome accession   NZ_CP072891
Coordinates   2662585..2663625 (-) Length   346 a.a.
NCBI ID   WP_010720621.1    Uniprot ID   A0A1V8X793
Organism   Enterococcus hirae strain F104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2657585..2668625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9538_RS12420 (J9538_12420) rny 2660459..2662015 (-) 1557 WP_010720620.1 ribonuclease Y -
  J9538_RS12425 (J9538_12425) recA 2662585..2663625 (-) 1041 WP_010720621.1 recombinase RecA Machinery gene
  J9538_RS12430 (J9538_12430) cinA 2663730..2664977 (-) 1248 WP_088775066.1 competence/damage-inducible protein A Machinery gene
  J9538_RS12435 (J9538_12435) pgsA 2665293..2665871 (-) 579 WP_010720623.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J9538_RS12440 (J9538_12440) - 2666041..2666931 (-) 891 WP_010720624.1 RodZ domain-containing protein -
  J9538_RS12445 (J9538_12445) - 2667162..2668451 (-) 1290 WP_088775067.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37247.48 Da        Isoelectric Point: 4.8219

>NTDB_id=556692 J9538_RS12425 WP_010720621.1 2662585..2663625(-) (recA) [Enterococcus hirae strain F104]
MADDRKAALDAALKKIEKNYGKGSIMKLGEKIDQQVSTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKNYMSTHPEMMAEVSA
LVRAAYGIGEDVEIPEETQAELPLEE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=556692 J9538_RS12425 WP_010720621.1 2662585..2663625(-) (recA) [Enterococcus hirae strain F104]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCGTTGAAAAAAATTGAAAAGAACTATGGGAAAGGCTCGATCATGAA
ACTTGGCGAAAAAATCGACCAACAAGTTTCGACTATCCCAAGTGGTTCTCTTGCATTAGATGTTGCTTTAGGTGTTGGTG
GTTACCCACGAGGACGTATCATTGAAGTATATGGTCCTGAAAGTTCAGGTAAGACAACCGTTGCCTTGCATGCAATCGCT
GAAGTACAAAAAAATGGCGGAACAGCCGCTTTTATCGATGCTGAGCATGCCTTAGACCCACAATATGCTCAAAAATTAGG
GGTAAACATTGACGAATTACTTCTTTCACAACCAGATACTGGGGAACAAGGACTAGAAATCGCTGATGCGCTTGTATCAA
GTGGTGCAGTAGATATCGTAGTAGTCGATTCGGTTGCCGCTTTAGTTCCGCGTGCTGAAATCGATGGAGAAATGGGTGAC
TCTCACGTAGGGTTACAAGCTCGATTAATGTCACAAGCATTGCGTAAACTATCTGGGTCGATCAATAAAACCAAAACGAT
CGCTATTTTTATTAACCAAATTCGTGAAAAAGTTGGAGTGATGTTCGGTAATCCTGAAATCACACCTGGTGGACGTGCAT
TAAAATTCTATGCAACGATTCGTTTAGAAGTACGCCGTGCGGAACAATTGAAACAAGGAACAGACATTGTTGGTAACCGT
ACGAAGATCAAAGTAGTTAAAAATAAAGTAGCGCCACCATTCAAAATTGCTGAAGTCGATGTGATGTATGGGCAAGGAAT
TTCTCAAGAAGGAGAATTGCTTGATATGGCGGTTGAAAAAGATATCGTTGATAAAAGTGGTGCTTGGTATTCTTACAAAG
AAGATCGTATTGGACAAGGTCGTGAGAATGCAAAAAATTACATGTCCACTCATCCTGAAATGATGGCAGAAGTTTCTGCT
TTAGTCCGGGCGGCTTATGGGATCGGTGAAGATGTAGAAATACCCGAAGAAACGCAAGCAGAACTTCCTTTAGAGGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V8X793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.651

99.422

0.792
  recA Bacillus subtilis subsp. subtilis str. 168

79.077

93.931

0.743
  recA Streptococcus mitis NCTC 12261

69.591

98.844

0.688
  recA Streptococcus mitis SK321

69.388

99.133

0.688
  recA Streptococcus pneumoniae R6

70.118

97.688

0.685
  recA Streptococcus pneumoniae Rx1

70.118

97.688

0.685
  recA Streptococcus pneumoniae D39

70.118

97.688

0.685
  recA Streptococcus pneumoniae TIGR4

70.118

97.688

0.685
  recA Streptococcus pyogenes NZ131

69.789

95.665

0.668
  recA Streptococcus mutans UA159

67.151

99.422

0.668
  recA Lactococcus lactis subsp. cremoris KW2

67.463

96.821

0.653
  recA Neisseria gonorrhoeae strain FA1090

61.404

98.844

0.607
  recA Neisseria gonorrhoeae MS11

61.404

98.844

0.607
  recA Neisseria gonorrhoeae MS11

61.404

98.844

0.607
  recA Acinetobacter baumannii D1279779

59.483

100

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.509

0.598
  recA Vibrio cholerae strain A1552

60

98.266

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60

98.266

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.398

95.087

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.931

0.578
  recA Acinetobacter baylyi ADP1

61.61

93.353

0.575
  recA Helicobacter pylori strain NCTC11637

57.514

100

0.575
  recA Helicobacter pylori 26695

57.514

100

0.575
  recA Ralstonia pseudosolanacearum GMI1000

63.259

90.462

0.572
  recA Pseudomonas stutzeri DSM 10701

60.185

93.642

0.564
  recA Glaesserella parasuis strain SC1401

60.436

92.775

0.561