Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J9539_RS12060 Genome accession   NZ_CP072878
Coordinates   2480750..2481799 (-) Length   349 a.a.
NCBI ID   WP_002287328.1    Uniprot ID   A0AAV3GRG6
Organism   Enterococcus faecium strain F88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2475750..2486799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9539_RS12050 (J9539_12050) proC 2477898..2478704 (+) 807 WP_002296027.1 pyrroline-5-carboxylate reductase -
  J9539_RS12055 (J9539_12055) rny 2478783..2480339 (-) 1557 WP_002287336.1 ribonuclease Y -
  J9539_RS12060 (J9539_12060) recA 2480750..2481799 (-) 1050 WP_002287328.1 recombinase RecA Machinery gene
  J9539_RS12065 (J9539_12065) cinA 2481908..2483149 (-) 1242 WP_002296026.1 competence/damage-inducible protein A Machinery gene
  J9539_RS12070 (J9539_12070) pgsA 2483389..2483967 (-) 579 WP_002296025.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J9539_RS12075 (J9539_12075) - 2484176..2485099 (-) 924 WP_218210458.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37513.91 Da        Isoelectric Point: 4.8330

>NTDB_id=556539 J9539_RS12060 WP_002287328.1 2480750..2481799(-) (recA) [Enterococcus faecium strain F88]
MADDRKAALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVAVPEDEKGQEELPLVEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=556539 J9539_RS12060 WP_002287328.1 2480750..2481799(-) (recA) [Enterococcus faecium strain F88]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTGAAAAAAATTGAAAAGAGCTATGGTAAAGGCTCTATTATGAA
ATTGGGCGAAAAAATCGACCAACAAATCTCTACAATTCCAAGTGGCTCTCTTGCGTTAGATGTCGCTTTAGGTGTCGGCG
GTTACCCCCGTGGACGTATCATCGAAGTATATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCACTACACGCTATTGCA
GAAGTACAAAAAAATGGCGGAACGGCCGCTTTCATTGATGCTGAGCATGCGTTAGATCCGCAATATGCACAAAAATTAGG
TGTGAATATCGATGAACTACTTCTTTCACAGCCTGACACAGGAGAACAAGGTCTAGAGATCGCTGATGCTTTAGTATCAA
GTGGGGCTGTAGATATCGTAGTAGTCGATTCAGTTGCTGCTTTAGTTCCACGAGCAGAAATCGACGGCGAAATGGGTGAC
TCACATGTCGGGTTACAAGCACGTTTGATGTCTCAAGCATTGCGTAAACTCTCTGGTTCGATCAACAAAACAAAAACAAT
CGCTATTTTCATCAACCAAATCCGTGAAAAAGTAGGCGTGATGTTTGGGAATCCAGAAATCACTCCTGGAGGACGCGCAT
TGAAATTCTACGCAACGATCCGTTTGGAAGTACGTCGTGCAGAACAATTGAAACAAGGTACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTCGTAAAAAACAAAGTAGCACCTCCTTTCAAAATCGCTGAAGTAGATGTCATGTATGGTTTAGGGAT
CTCACAAGAAGGAGAACTTCTAGACATGGCAGTAGAAAAAGACATTGTTGATAAAAGCGGTGCTTGGTATTCTTATAAAG
AAGATCGGATTGGTCAAGGACGGGAAAACGCTAAAATCTATATGGCTAATCATCCTGAAATGATGGCAGAAGTTTCTGCT
CTAGTTAGAGCAGCTTATGGTATTGGTGAAGAAGTCGCTGTCCCAGAAGATGAAAAAGGACAAGAAGAATTGCCTTTAGT
AGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.386

99.427

0.779
  recA Bacillus subtilis subsp. subtilis str. 168

79.385

93.123

0.739
  recA Streptococcus pneumoniae R6

69.318

100

0.699
  recA Streptococcus pneumoniae TIGR4

69.318

100

0.699
  recA Streptococcus pneumoniae Rx1

69.318

100

0.699
  recA Streptococcus pneumoniae D39

69.318

100

0.699
  recA Streptococcus mitis SK321

71.131

96.275

0.685
  recA Streptococcus mitis NCTC 12261

70.833

96.275

0.682
  recA Streptococcus pyogenes NZ131

69.789

94.842

0.662
  recA Streptococcus mutans UA159

66.571

99.427

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.477

94.269

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

93.696

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.35

98.281

0.593
  recA Neisseria gonorrhoeae strain FA1090

62.614

94.269

0.59
  recA Neisseria gonorrhoeae MS11

62.614

94.269

0.59
  recA Neisseria gonorrhoeae MS11

62.614

94.269

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.123

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

92.55

0.57
  recA Acinetobacter baumannii D1279779

61.61

92.55

0.57
  recA Vibrio cholerae strain A1552

61.61

92.55

0.57
  recA Helicobacter pylori 26695

58.065

97.708

0.567
  recA Helicobacter pylori strain NCTC11637

58.065

97.708

0.567
  recA Acinetobacter baylyi ADP1

61.3

92.55

0.567
  recA Ralstonia pseudosolanacearum GMI1000

62.939

89.685

0.564
  recA Pseudomonas stutzeri DSM 10701

60.494

92.837

0.562
  recA Glaesserella parasuis strain SC1401

60.748

91.977

0.559