Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J8L76_RS04335 Genome accession   NZ_CP072875
Coordinates   942859..943893 (+) Length   344 a.a.
NCBI ID   WP_216130390.1    Uniprot ID   -
Organism   Azospira inquinata strain Azo-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 937859..948893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8L76_RS04305 (J8L76_04305) nusB 938018..938521 (+) 504 WP_216130378.1 transcription antitermination factor NusB -
  J8L76_RS04310 (J8L76_04310) thiL 938617..939570 (+) 954 WP_216130380.1 thiamine-phosphate kinase -
  J8L76_RS04315 (J8L76_04315) - 939548..940039 (+) 492 WP_408627058.1 phosphatidylglycerophosphatase A -
  J8L76_RS04320 (J8L76_04320) - 940044..940574 (+) 531 WP_216130384.1 CinA family protein -
  J8L76_RS04325 (J8L76_04325) bfr 940657..941145 (+) 489 WP_216130386.1 bacterioferritin -
  J8L76_RS04330 (J8L76_04330) - 941191..942747 (-) 1557 WP_216130388.1 PAS domain-containing protein -
  J8L76_RS04335 (J8L76_04335) recA 942859..943893 (+) 1035 WP_216130390.1 recombinase RecA Machinery gene
  J8L76_RS04340 (J8L76_04340) recX 943886..944326 (+) 441 WP_216130392.1 recombination regulator RecX -
  J8L76_RS04345 (J8L76_04345) lptB 944339..945088 (+) 750 WP_216130394.1 LPS export ABC transporter ATP-binding protein -
  J8L76_RS04350 (J8L76_04350) rpoN/rpoN1 945161..946663 (+) 1503 WP_216130396.1 RNA polymerase factor sigma-54 Machinery gene
  J8L76_RS04355 (J8L76_04355) hpf 946680..947003 (+) 324 WP_216130398.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  J8L76_RS04360 (J8L76_04360) ptsN 947155..947640 (+) 486 WP_216130400.1 PTS IIA-like nitrogen regulatory protein PtsN -
  J8L76_RS04365 (J8L76_04365) hprK 947609..948547 (+) 939 WP_216130402.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36585.18 Da        Isoelectric Point: 6.5338

>NTDB_id=556483 J8L76_RS04335 WP_216130390.1 942859..943893(+) (recA) [Azospira inquinata strain Azo-2]
MEDNKAKALAAALAQIEKQFGKGSIMKMGATEVDKGLEVISTGSLGLDVALGVGGLPRGRVVEIYGPESSGKTTLTLQVI
AEAQKKGGVAAFIDAEHALDPQYAQKLGVKVGDLLISQPDTGEQALEIADMLVRSGGVDVIVVDSVAALTPKAEIEGEMG
DSMMGLHARLMSQALRKLTANIKKTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKKADEVIGN
ETRVKVVKNKVSPPFREAIFDILYGEGISREGEIIELGVNNKIVEKSGAWYSYNGEKIGQGKDNVREFLKANPALAQEIE
AKIRTAVGVTKAAPAPEAPTPGDD

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=556483 J8L76_RS04335 WP_216130390.1 942859..943893(+) (recA) [Azospira inquinata strain Azo-2]
ATGGAAGACAATAAGGCTAAGGCGCTCGCCGCCGCGCTGGCACAGATTGAAAAGCAGTTCGGCAAGGGCTCCATCATGAA
GATGGGCGCCACCGAAGTGGACAAGGGACTGGAAGTCATTTCCACCGGCTCCCTGGGGCTGGACGTAGCCCTGGGCGTGG
GCGGTCTGCCCCGGGGCCGGGTGGTGGAAATCTACGGTCCGGAATCTTCCGGGAAAACCACCCTGACCCTCCAGGTCATT
GCCGAAGCCCAGAAAAAAGGGGGCGTGGCCGCCTTTATCGACGCGGAACACGCCCTGGATCCCCAATACGCCCAGAAGCT
GGGCGTCAAGGTGGGTGACCTGCTCATTTCCCAGCCGGATACGGGGGAACAGGCCCTGGAAATCGCCGACATGCTGGTCC
GTTCCGGGGGCGTGGATGTGATTGTGGTGGACTCCGTGGCCGCCCTCACCCCCAAGGCGGAAATTGAAGGGGAAATGGGG
GACTCCATGATGGGCCTCCACGCCCGTCTGATGAGCCAGGCCCTGCGCAAGCTCACCGCCAACATCAAGAAAACCAACAC
CCTGGTGATTTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAATCCGGAAACCACCACCGGGGGCAACG
CCCTGAAGTTCTATGCCTCCGTGCGTCTGGACATCCGCCGCATCGGCTCCATCAAGAAGGCGGACGAGGTGATCGGCAAC
GAAACCCGGGTCAAGGTGGTGAAGAACAAGGTCTCCCCCCCCTTCCGGGAAGCCATTTTCGACATCCTCTACGGGGAAGG
CATTTCCCGGGAAGGGGAAATCATCGAGCTGGGCGTGAACAACAAGATCGTGGAAAAGTCCGGCGCCTGGTATTCCTACA
ACGGGGAAAAGATCGGTCAGGGCAAGGACAATGTGCGGGAATTCCTCAAGGCTAATCCCGCCCTGGCCCAGGAAATCGAA
GCCAAGATCCGCACCGCCGTGGGGGTGACCAAAGCTGCCCCCGCCCCGGAAGCCCCTACCCCCGGGGATGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.646

98.547

0.785
  recA Neisseria gonorrhoeae MS11

77.204

95.64

0.738
  recA Neisseria gonorrhoeae MS11

77.204

95.64

0.738
  recA Neisseria gonorrhoeae strain FA1090

77.204

95.64

0.738
  recA Pseudomonas stutzeri DSM 10701

72.141

99.128

0.715
  recA Acinetobacter baylyi ADP1

72.072

96.802

0.698
  recA Glaesserella parasuis strain SC1401

73.231

94.477

0.692
  recA Vibrio cholerae strain A1552

72.222

94.186

0.68
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.222

94.186

0.68
  recA Acinetobacter baumannii D1279779

71.296

94.186

0.672
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

69.113

95.058

0.657
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.152

95.93

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

65.35

95.64

0.625
  recA Helicobacter pylori 26695

63.05

99.128

0.625
  recA Helicobacter pylori strain NCTC11637

62.757

99.128

0.622
  recA Latilactobacillus sakei subsp. sakei 23K

60.35

99.709

0.602
  recA Streptococcus mutans UA159

60.423

96.221

0.581
  recA Streptococcus mitis SK321

58.876

98.256

0.578
  recA Streptococcus pyogenes NZ131

60

95.93

0.576
  recA Streptococcus pneumoniae R6

57.941

98.837

0.573
  recA Streptococcus pneumoniae Rx1

57.941

98.837

0.573
  recA Streptococcus pneumoniae D39

57.941

98.837

0.573
  recA Streptococcus pneumoniae TIGR4

57.941

98.837

0.573
  recA Streptococcus mitis NCTC 12261

59.878

95.64

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

94.186

0.564
  recA Lactococcus lactis subsp. cremoris KW2

59.021

95.058

0.561