Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   THECO_RS09865 Genome accession   NC_019897
Coordinates   2107691..2108749 (-) Length   352 a.a.
NCBI ID   WP_015254893.1    Uniprot ID   L0ECZ5
Organism   Thermobacillus composti KWC4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2102691..2113749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THECO_RS09840 (Theco_2021) - 2102788..2103729 (-) 942 WP_015254888.1 dipeptidase -
  THECO_RS09845 (Theco_2022) - 2103892..2104152 (-) 261 WP_015254889.1 stage V sporulation protein S -
  THECO_RS09850 (Theco_2023) - 2104307..2105104 (-) 798 WP_015254890.1 TIGR00282 family metallophosphoesterase -
  THECO_RS09855 (Theco_2024) rny 2105166..2106713 (-) 1548 WP_015254891.1 ribonuclease Y -
  THECO_RS09860 (Theco_2025) - 2106916..2107581 (-) 666 WP_015254892.1 regulatory protein RecX -
  THECO_RS09865 (Theco_2026) recA 2107691..2108749 (-) 1059 WP_015254893.1 recombinase RecA Machinery gene
  THECO_RS09870 (Theco_2027) - 2108957..2110216 (-) 1260 WP_015254894.1 competence/damage-inducible protein A -
  THECO_RS22510 - 2110680..2110808 (+) 129 WP_269724202.1 hypothetical protein -
  THECO_RS09875 (Theco_2028) pgsA 2110869..2111444 (-) 576 WP_015254895.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  THECO_RS09880 (Theco_2029) rimO 2111441..2112769 (-) 1329 WP_015254896.1 30S ribosomal protein S12 methylthiotransferase RimO -
  THECO_RS09885 (Theco_2030) - 2112897..2113391 (-) 495 WP_015254897.1 YajQ family cyclic di-GMP-binding protein -
  THECO_RS21995 (Theco_2031) - 2113518..2113679 (-) 162 WP_015254898.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37808.21 Da        Isoelectric Point: 4.8382

>NTDB_id=55291 THECO_RS09865 WP_015254893.1 2107691..2108749(-) (recA) [Thermobacillus composti KWC4]
MSDRRAALEMALRQIEKQFGKGSIMKLGEQAGLTVETVPSGSLALDIALGVGGMPRGRIIEIYGPESSGKTTVALHAIAE
VQKIGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRRVETIKMGSELVGNRT
RIKVVKNKVAPPFKQAEIDIMYGEGISKEGSLIDIGTELDIIQKSGAWFSFEGERLGQGRENAKQYLKDRPDIAAKIEKQ
IRDASNLIGASATSAFAASPDEDDEFEDDFEA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=55291 THECO_RS09865 WP_015254893.1 2107691..2108749(-) (recA) [Thermobacillus composti KWC4]
GTGTCGGATCGCCGTGCGGCGTTGGAAATGGCTTTGCGCCAGATTGAGAAACAATTCGGCAAAGGTTCCATCATGAAGCT
GGGCGAGCAGGCAGGTCTTACGGTCGAGACCGTGCCCAGCGGCTCGCTGGCGCTGGATATTGCCCTTGGTGTCGGCGGCA
TGCCGAGGGGACGGATCATTGAAATCTACGGGCCCGAATCGTCCGGAAAAACGACGGTCGCGCTGCATGCGATCGCCGAA
GTGCAGAAGATCGGCGGCCAAGCCGCGTTCATCGACGCGGAGCATGCGCTTGACCCGCTCTATGCGAGCAAGCTCGGCGT
GAACATCGACGAGCTGCTGCTTTCGCAGCCCGATACGGGCGAACAGGCGCTCGAGATCGCGGAAGCGCTCGTGCGCAGCG
GCGCCATCGACATCATCGTCATCGACTCGGTTGCGGCGCTCGTGCCGAAAGCCGAGATCGAGGGCGAGATGGGCGATTCG
CATGTCGGCCTCCAGGCCCGGCTCATGTCTCAGGCGCTGCGCAAGCTGTCCGGCGCGATCAGCAAATCGAAGACGATCGC
GATCTTCATCAACCAGCTCCGCGAGAAAGTCGGCGTCATGTTCGGCAATCCGGAGACGACGCCGGGCGGACGCGCGCTGA
AGTTCTACGCGAGCGTGCGGCTGGAAGTGCGCCGCGTCGAGACGATCAAGATGGGCAGCGAGCTCGTCGGCAACCGGACG
CGCATCAAGGTCGTGAAGAACAAGGTGGCGCCGCCGTTCAAACAGGCGGAAATCGACATCATGTACGGCGAAGGCATCTC
GAAGGAAGGCAGCCTGATCGACATCGGCACGGAGCTGGATATCATCCAGAAGAGCGGGGCATGGTTCTCGTTCGAAGGCG
AACGGCTCGGCCAGGGCAGGGAGAACGCGAAGCAATATCTGAAGGACCGTCCCGACATCGCGGCCAAGATCGAGAAGCAA
ATCCGCGACGCCAGCAATCTGATCGGCGCGTCGGCAACGTCGGCCTTCGCTGCTTCGCCGGATGAGGACGACGAATTCGA
AGACGATTTCGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0ECZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.651

92.898

0.759
  recA Latilactobacillus sakei subsp. sakei 23K

73.913

91.477

0.676
  recA Streptococcus pneumoniae D39

68.546

95.739

0.656
  recA Streptococcus pneumoniae Rx1

68.546

95.739

0.656
  recA Streptococcus pneumoniae R6

68.546

95.739

0.656
  recA Streptococcus pneumoniae TIGR4

68.546

95.739

0.656
  recA Streptococcus mitis SK321

69.486

94.034

0.653
  recA Streptococcus mitis NCTC 12261

69.486

94.034

0.653
  recA Streptococcus mutans UA159

65.242

99.716

0.651
  recA Streptococcus pyogenes NZ131

70.062

92.045

0.645
  recA Lactococcus lactis subsp. cremoris KW2

68.278

94.034

0.642
  recA Vibrio cholerae strain A1552

62.286

99.432

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.286

99.432

0.619
  recA Neisseria gonorrhoeae MS11

66.667

91.193

0.608
  recA Neisseria gonorrhoeae MS11

66.667

91.193

0.608
  recA Neisseria gonorrhoeae strain FA1090

66.667

91.193

0.608
  recA Glaesserella parasuis strain SC1401

62.099

97.443

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.383

98.58

0.605
  recA Acinetobacter baylyi ADP1

60.345

98.864

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

92.898

0.594
  recA Pseudomonas stutzeri DSM 10701

60.526

97.159

0.588
  recA Acinetobacter baumannii D1279779

64.174

91.193

0.585
  recA Ralstonia pseudosolanacearum GMI1000

66.343

87.784

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.733

91.477

0.574
  recA Helicobacter pylori 26695

60.991

91.761

0.56
  recA Helicobacter pylori strain NCTC11637

60.991

91.761

0.56

Multiple sequence alignment