Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4854_RS09955 Genome accession   NZ_CP072329
Coordinates   2063057..2064202 (-) Length   381 a.a.
NCBI ID   WP_200772397.1    Uniprot ID   A0A9X0WMN8
Organism   Streptococcus lactarius strain CCUG 66490     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2058057..2069202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS09920 (J4854_09920) - 2058781..2059194 (-) 414 WP_222935306.1 SP_0198 family lipoprotein -
  J4854_RS09925 (J4854_09925) - 2059268..2060500 (-) 1233 WP_200772400.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  J4854_RS09930 (J4854_09930) - 2060709..2061014 (-) 306 WP_003001941.1 DUF1292 domain-containing protein -
  J4854_RS09935 (J4854_09935) ruvX 2061037..2061456 (-) 420 WP_200772399.1 Holliday junction resolvase RuvX -
  J4854_RS09940 (J4854_09940) - 2061456..2061722 (-) 267 WP_003002070.1 IreB family regulatory phosphoprotein -
  J4854_RS09945 (J4854_09945) - 2061837..2062433 (-) 597 WP_200772398.1 SP0191 family lipoprotein -
  J4854_RS09950 (J4854_09950) spx 2062571..2062969 (-) 399 WP_003009108.1 transcriptional regulator Spx -
  J4854_RS09955 (J4854_09955) recA 2063057..2064202 (-) 1146 WP_200772397.1 recombinase RecA Machinery gene
  J4854_RS09960 (J4854_09960) cinA 2064322..2065590 (-) 1269 WP_200772396.1 competence/damage-inducible protein A Machinery gene
  J4854_RS09965 (J4854_09965) - 2065947..2066978 (+) 1032 WP_200772395.1 S66 family peptidase -
  J4854_RS09970 (J4854_09970) - 2067194..2067760 (-) 567 WP_200772394.1 DNA-3-methyladenine glycosylase I -
  J4854_RS09975 (J4854_09975) ruvA 2067770..2068363 (-) 594 WP_200772393.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41183.94 Da        Isoelectric Point: 4.8002

>NTDB_id=552068 J4854_RS09955 WP_200772397.1 2063057..2064202(-) (recA) [Streptococcus lactarius strain CCUG 66490]
MAKKQKKLDEISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELLKIATDLDLIQKAGAWYSYNGEKIGQGSE
NAKKFLADHPEIFDEIDHKVRVHFGLIEEDETVKPLDKTEEEVPLAEEVTLDLDDAIEIED

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=552068 J4854_RS09955 WP_200772397.1 2063057..2064202(-) (recA) [Streptococcus lactarius strain CCUG 66490]
ATGGCGAAAAAACAGAAAAAATTAGATGAGATCTCTAAGAAATTTGGAGATGAGCGTGAAAAAGCGCTCAATGATGCCCT
GAAGTTGATCGAAAAAGACTTTGGTAAAGGATCCATCATGCGTTTGGGCGAACGCGCGGAACAAAAAGTACAAGTGATGA
GCTCTGGTTCATTGGCGCTTGATATTGCCTTGGGTGCTGGGGGCTATCCAAAAGGTCGGATCATCGAAATCTATGGTCCA
GAATCATCTGGTAAAACTACCGTTGCCCTCCATGCAGTAGCGCAAGCACAGAAAGAAGGAGGTATTGCTGCCTTTATCGA
TGCTGAGCACGCTTTGGATCCATCTTATGCAGCAGCTCTTGGGGTCAATATTGATGAACTCCTCTTGTCTCAACCAGACT
CAGGGGAACAAGGACTTGAAATTGCTGGTAAATTGATCGACTCAGGTGCCGTTGATTTGGTGGTTGTCGACTCTGTCGCG
GCCTTGGTACCTCGTGCGGAAATTGATGGTGATATCGGAGATAGCCACGTTGGTTTGCAAGCGCGGATGATGAGCCAAGC
TATGCGCAAACTTGGAGCTTCCATCAATAAAACCAAGACCATTGCCATCTTTATCAACCAATTACGTGAAAAAGTAGGGA
TCATGTTTGGGAACCCTGAAACAACACCTGGTGGCCGTGCCCTTAAATTCTACGCTTCTGTTCGTTTAGATGTTCGTGGA
AATACCCAAATTAAGGGAACTGGGGACCAAAAAGATACCAATGTCGGTAAGGAAACTAAGATCAAGGTTGTAAAGAATAA
GGTGGCTCCACCCTTCAAAGAAGCCATGGTTGAAATCATGTACGGGGAAGGAATTTCACGTACCGGCGAATTGCTGAAAA
TTGCGACAGACCTCGATTTGATCCAAAAAGCTGGTGCTTGGTATTCTTACAATGGCGAAAAAATTGGTCAAGGATCTGAA
AATGCTAAGAAATTCTTAGCTGACCACCCAGAAATTTTTGACGAAATCGACCACAAGGTTCGGGTTCATTTTGGGTTGAT
CGAAGAAGACGAAACAGTGAAACCCCTTGATAAAACTGAAGAAGAAGTTCCTCTTGCAGAAGAAGTAACACTAGATTTAG
ATGATGCGATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

90.026

100

0.9
  recA Streptococcus mitis SK321

89.501

100

0.895
  recA Streptococcus pneumoniae Rx1

88.571

100

0.895
  recA Streptococcus pneumoniae D39

88.571

100

0.895
  recA Streptococcus pneumoniae R6

88.571

100

0.895
  recA Streptococcus pneumoniae TIGR4

88.571

100

0.895
  recA Streptococcus mutans UA159

86.945

100

0.874
  recA Streptococcus pyogenes NZ131

86.877

100

0.869
  recA Lactococcus lactis subsp. cremoris KW2

77.493

92.126

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

65.385

95.538

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

68.693

86.352

0.593
  recA Neisseria gonorrhoeae MS11

59.885

91.601

0.549
  recA Neisseria gonorrhoeae strain FA1090

59.885

91.601

0.549
  recA Neisseria gonorrhoeae MS11

59.885

91.601

0.549
  recA Acinetobacter baylyi ADP1

58.974

92.126

0.543
  recA Glaesserella parasuis strain SC1401

60.588

89.239

0.541
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.462

85.302

0.533
  recA Vibrio cholerae strain A1552

62.462

85.302

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

84.777

0.533
  recA Ralstonia pseudosolanacearum GMI1000

58.892

90.026

0.53
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

86.352

0.53
  recA Acinetobacter baumannii D1279779

61.231

85.302

0.522
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.308

86.877

0.507
  recA Helicobacter pylori strain NCTC11637

56.012

89.501

0.501
  recA Helicobacter pylori 26695

56.012

89.501

0.501
  recA Pseudomonas stutzeri DSM 10701

56.176

89.239

0.501