Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4N42_RS02230 Genome accession   NZ_CP071859
Coordinates   467368..468408 (+) Length   346 a.a.
NCBI ID   WP_252030768.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462368..473408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS02215 (J4N42_02215) rpoS 462987..463967 (+) 981 WP_252029431.1 RNA polymerase sigma factor RpoS Regulator
  J4N42_RS02220 (J4N42_02220) mutS 464039..466603 (-) 2565 WP_252029433.1 DNA mismatch repair protein MutS -
  J4N42_RS02225 (J4N42_02225) pncC 466689..467180 (+) 492 WP_252029437.1 nicotinamide-nucleotide amidase -
  J4N42_RS02230 (J4N42_02230) recA 467368..468408 (+) 1041 WP_252030768.1 recombinase RecA Machinery gene
  J4N42_RS02235 (J4N42_02235) recX 468506..468973 (+) 468 WP_252029439.1 recombination regulator RecX -
  J4N42_RS02240 (J4N42_02240) alaS 469143..471725 (+) 2583 WP_252029441.1 alanine--tRNA ligase -
  J4N42_RS02245 (J4N42_02245) - 471920..473107 (+) 1188 WP_252029443.1 aspartate kinase -
  J4N42_RS02250 (J4N42_02250) csrA 473199..473396 (+) 198 WP_004415691.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37316.79 Da        Isoelectric Point: 5.0620

>NTDB_id=548497 J4N42_RS02230 WP_252030768.1 467368..468408(+) (recA) [Vibrio sp. SCSIO 43135]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRICEIYGPESSGKTTLTLELIA
AAQRAGKTCAFIDAEHALDPIYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANAGKYLRENPEVAQTIDS
KLREMLLTPAVADEPETGEMPKEEEF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=548497 J4N42_RS02230 WP_252030768.1 467368..468408(+) (recA) [Vibrio sp. SCSIO 43135]
ATGGACGAGAACAAACAGAAGGCTCTGGCCGCAGCTTTAGGTCAGATCGAAAAGCAATTCGGTAAAGGTTCAATCATGCG
CCTTGGTGATAACCGCACCATGGATGTTGAAACCATTTCAACAGGTTCACTTTCTCTTGATATTGCACTGGGTGCTGGTG
GCTTGCCAATGGGCCGTATTTGTGAAATCTACGGACCAGAATCGTCAGGTAAAACGACACTTACTCTAGAGCTTATTGCT
GCTGCTCAACGCGCAGGCAAAACGTGTGCATTTATCGATGCAGAGCACGCACTTGACCCAATTTATGCGAAGAAGCTAGG
CGTGGATATTGATGCACTTCTTGTTTCTCAGCCAGACACTGGTGAGCAAGCACTAGAAATCTGTGATGCATTGGCTCGCT
CTGGTGCGATTGACGTTATGGTTGTCGACTCGGTAGCGGCTCTAACACCTAAAGCAGAGATCGAAGGCGAAATGGGTGAT
AGCCACATGGGTCTTCAAGCGCGTATGCTTTCACAAGCAATGCGTAAGCTAACAGGTAATCTAAAGCAGTCAAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCTGAAACAACCACGGGTGGTAATGCAC
TTAAATTCTACGCTTCAGTTCGTCTAGATATCCGCCGTACAGGCTCTATCAAAGAAGGTGATGAGGTGGTTGGTAATGAA
ACTCGTATCAAGGTTGTGAAGAACAAGATTGCGGCACCATTTAAGCAAGCTGAAACTCAGATCCTATATGGACAAGGCTT
TAACCGCGAGGGTGAGCTGATTGATTTAGGTGTTAAGCACAAGTTGGTAGAAAAAGCAGGTGCTTGGTACAGCTACAATG
GTGACAAGATCGGTCAAGGTAAAGCAAACGCAGGTAAATACCTACGTGAGAACCCAGAAGTGGCACAAACGATTGATAGC
AAACTTCGTGAGATGCTATTAACGCCAGCGGTTGCTGATGAGCCTGAAACAGGTGAGATGCCAAAAGAAGAAGAGTTCTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

88.385

100

0.902
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.385

100

0.902
  recA Acinetobacter baylyi ADP1

72.965

99.422

0.725
  recA Pseudomonas stutzeri DSM 10701

75.915

94.798

0.72
  recA Acinetobacter baumannii D1279779

75

94.798

0.711
  recA Neisseria gonorrhoeae MS11

67.335

100

0.679
  recA Neisseria gonorrhoeae MS11

67.335

100

0.679
  recA Neisseria gonorrhoeae strain FA1090

67.335

100

0.679
  recA Glaesserella parasuis strain SC1401

70.062

93.642

0.656
  recA Ralstonia pseudosolanacearum GMI1000

71.429

91.04

0.65
  recA Helicobacter pylori 26695

60.411

98.555

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.263

92.197

0.592
  recA Helicobacter pylori strain NCTC11637

60.117

98.555

0.592
  recA Streptococcus mitis SK321

59.302

99.422

0.59
  recA Streptococcus mitis NCTC 12261

59.012

99.422

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.775

0.578
  recA Streptococcus pneumoniae Rx1

61.61

93.353

0.575
  recA Streptococcus pneumoniae D39

61.61

93.353

0.575
  recA Streptococcus pneumoniae R6

61.61

93.353

0.575
  recA Streptococcus pneumoniae TIGR4

61.61

93.353

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

57.726

99.133

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

92.775

0.572
  recA Streptococcus pyogenes NZ131

60.615

93.931

0.569
  recA Streptococcus mutans UA159

60.615

93.931

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.665

0.566
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555