Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   J4N42_RS02215 Genome accession   NZ_CP071859
Coordinates   462987..463967 (+) Length   326 a.a.
NCBI ID   WP_252029431.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43135     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 457987..468967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N42_RS02185 (J4N42_02185) ispD 458221..458961 (+) 741 WP_252029419.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  J4N42_RS02190 (J4N42_02190) ispF 458965..459438 (+) 474 WP_252029420.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  J4N42_RS02195 (J4N42_02195) truD 459560..460603 (+) 1044 WP_252029423.1 tRNA pseudouridine(13) synthase TruD -
  J4N42_RS02200 (J4N42_02200) surE 460604..461365 (+) 762 WP_252029425.1 5'/3'-nucleotidase SurE -
  J4N42_RS02205 (J4N42_02205) - 461362..461988 (+) 627 WP_252029427.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  J4N42_RS02210 (J4N42_02210) nlpD 461991..462911 (+) 921 WP_252029429.1 murein hydrolase activator NlpD -
  J4N42_RS02215 (J4N42_02215) rpoS 462987..463967 (+) 981 WP_252029431.1 RNA polymerase sigma factor RpoS Regulator
  J4N42_RS02220 (J4N42_02220) mutS 464039..466603 (-) 2565 WP_252029433.1 DNA mismatch repair protein MutS -
  J4N42_RS02225 (J4N42_02225) pncC 466689..467180 (+) 492 WP_252029437.1 nicotinamide-nucleotide amidase -
  J4N42_RS02230 (J4N42_02230) recA 467368..468408 (+) 1041 WP_252030768.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37314.16 Da        Isoelectric Point: 4.6532

>NTDB_id=548495 J4N42_RS02215 WP_252029431.1 462987..463967(+) (rpoS) [Vibrio sp. SCSIO 43135]
MSISNAATKVEEFDLEQTDISSEESQTTSKTSTAEESKEEFEVSAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVDDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDNDIKDSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMENL
FSVEDE

Nucleotide


Download         Length: 981 bp        

>NTDB_id=548495 J4N42_RS02215 WP_252029431.1 462987..463967(+) (rpoS) [Vibrio sp. SCSIO 43135]
ATGAGTATCAGCAATGCAGCAACGAAAGTCGAAGAGTTCGATTTAGAACAAACGGATATCAGTTCTGAAGAGAGCCAAAC
TACATCAAAAACTTCTACAGCTGAAGAAAGCAAAGAAGAGTTTGAAGTTTCCGCCAAAAGCCTTGATGCCACTCAATTGT
ATTTGGGTGAAATCGGTTTTTCTCCACTCCTAACCGCAGAAGAAGAAGTCTTATACGCTCGTCGAGCGCTACGAGGCGAT
GAAGCCGCACGTAAGCGTATGATCGAGAGTAACCTTCGTCTTGTGGTGAAAATCTCACGTCGTTACAGCAATCGTGGTCT
TGCGTTACTTGATCTAATTGAAGAAGGTAACTTAGGCTTGATTCGCGCAGTTGAAAAGTTTGATCCAGAAAGAGGTTTCC
GATTCTCTACCTACGCAACATGGTGGATCAGACAGACCATCGAACGTGCACTAATGAATCAAACGCGTACTATTCGCCTA
CCTATTCATGTGGTTAAAGAGCTGAATATCTACCTGCGTACAGCACGTGAGTTATCGCAAAAACTTGACCATGAGCCTAC
CGCAGAAGAAATTGCAACTAAGCTAGATAAACCAGTTGATGATGTAAGTAAAATGCTGCGACTGAATGAGCGCGTGAGTT
CTGTGGATACACCAATTGGTGGCGATGGTGAAAAAGCGCTATTGGATATTATTCCAGATATCAACAACTCAGACCCAGAG
GTTTCCACTCAAGACAATGACATTAAAGACTCCCTAATCCATTGGCTTGATGAACTAAACCCTAAACAAAAAGAAGTGCT
AGCACGTCGTTTTGGATTACTGGGCTATGAGCCTTCAACGCTTGAAGAAGTAGGGCGTGAAATCAACCTAACTCGTGAGC
GTGTACGTCAAATCCAAGTGGAAGGTTTACGCCGCTTAAGAGAAATCTTGATCAAACAAGGCTTGAACATGGAAAACCTG
TTCAGCGTTGAAGATGAATAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.483

100

0.853