Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LSP18_RS23610 Genome accession   NZ_CP089063
Coordinates   5048674..5049099 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain UNC_PaerCF37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5043674..5054099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP18_RS23595 (LSP18_23815) pilX 5044238..5044825 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  LSP18_RS23600 (LSP18_23820) pilY1 5044837..5048328 (+) 3492 WP_049308604.1 type 4a pilus biogenesis protein PilY1 -
  LSP18_RS23605 (LSP18_23825) pilY2 5048330..5048677 (+) 348 WP_057382755.1 type 4a fimbrial biogenesis protein PilY2 -
  LSP18_RS23610 (LSP18_23830) comF 5048674..5049099 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  LSP18_RS23615 (LSP18_23835) ispH 5049146..5050090 (-) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LSP18_RS23620 (LSP18_23840) fkpB 5050176..5050616 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  LSP18_RS23625 (LSP18_23845) lspA 5050609..5051118 (-) 510 WP_003102615.1 signal peptidase II -
  LSP18_RS23630 (LSP18_23850) ileS 5051111..5053942 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=548374 LSP18_RS23610 WP_003094721.1 5048674..5049099(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF37]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=548374 LSP18_RS23610 WP_003094721.1 5048674..5049099(+) (comF) [Pseudomonas aeruginosa strain UNC_PaerCF37]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383