Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4N44_RS14075 Genome accession   NZ_CP071852
Coordinates   2967373..2968416 (-) Length   347 a.a.
NCBI ID   WP_053050623.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2962373..2973416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N44_RS14060 (J4N44_13990) - 2962584..2963771 (-) 1188 WP_005452123.1 aspartate kinase -
  J4N44_RS14065 (J4N44_13995) alaS 2963974..2966556 (-) 2583 WP_252044569.1 alanine--tRNA ligase -
  J4N44_RS14070 (J4N44_14000) recX 2966699..2967166 (-) 468 WP_009698765.1 recombination regulator RecX -
  J4N44_RS14075 (J4N44_14005) recA 2967373..2968416 (-) 1044 WP_053050623.1 recombinase RecA Machinery gene
  J4N44_RS14080 (J4N44_14010) pncC 2968618..2969100 (-) 483 WP_005452118.1 nicotinamide-nucleotide amidase -
  J4N44_RS14085 (J4N44_14015) mutS 2969186..2971747 (+) 2562 WP_252044570.1 DNA mismatch repair protein MutS -
  J4N44_RS14090 (J4N44_14020) rpoS 2971841..2972824 (-) 984 WP_005452115.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37444.87 Da        Isoelectric Point: 4.9743

>NTDB_id=548374 J4N44_RS14075 WP_053050623.1 2967373..2968416(-) (recA) [Vibrio sp. SCSIO 43155]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLRENPEVGKTIDT
KLREMLLSPALPEAPESGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=548374 J4N44_RS14075 WP_053050623.1 2967373..2968416(-) (recA) [Vibrio sp. SCSIO 43155]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATTATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTTGAGCTGATCGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCGCTAGATCCTGTATACGCGAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAGCCTGATACGGGTGAGCAAGCGCTAGAGATCTGTGACGCACTTGCACGTT
CTGGTGCTATTGACGTTATGGTGGTTGACTCTGTTGCAGCACTAACACCAAAAGCAGAAATTGAAGGCGAAATGGGTGAC
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAACAGTCTAACTGTAT
GTGTATCTTTATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACAACGACTGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTAGTAGGTAACGAA
ACGCGCATCAAAGTTGTTAAGAACAAGATTGCTGCACCGTTTAAAGAAGCAAACACGCAAATCATGTACGGCCAAGGTTT
CAACCGTGAAGGTGAGCTGATTGACCTAGGCGTGAAGCACAAGTTAGTTGAAAAAGCAGGTGCATGGTACAGCTACCAAG
GCGACAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTACGCGAAAACCCAGAAGTCGGTAAGACTATCGATACT
AAACTGCGTGAAATGCTACTTTCACCAGCATTACCTGAAGCACCAGAATCAGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.137

94.813

0.902
  recA Vibrio cholerae strain A1552

95.137

94.813

0.902
  recA Acinetobacter baylyi ADP1

72.254

99.712

0.72
  recA Pseudomonas stutzeri DSM 10701

75.535

94.236

0.712
  recA Acinetobacter baumannii D1279779

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

70.552

93.948

0.663
  recA Neisseria gonorrhoeae MS11

68.405

93.948

0.643
  recA Neisseria gonorrhoeae MS11

68.405

93.948

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.405

93.948

0.643
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.625

0.637
  recA Helicobacter pylori strain NCTC11637

60.882

97.983

0.597
  recA Helicobacter pylori 26695

60.588

97.983

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.323

91.931

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus pneumoniae Rx1

62.229

93.084

0.579
  recA Streptococcus pneumoniae TIGR4

62.229

93.084

0.579
  recA Streptococcus mitis SK321

62.229

93.084

0.579
  recA Streptococcus pneumoniae R6

62.229

93.084

0.579
  recA Streptococcus pneumoniae D39

62.229

93.084

0.579
  recA Streptococcus mitis NCTC 12261

61.92

93.084

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

59.517

95.389

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.389

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.507

0.568
  recA Streptococcus mutans UA159

60.615

93.66

0.568
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Lactococcus lactis subsp. cremoris KW2

60.372

93.084

0.562