Detailed information NTG0548376

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J4N44_RS14090
• Genome accession: NZ_CP071852
• Coordinates: 2971841..2972824 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio sp. SCSIO 43155
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2966841..2977824

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N44_RS14075 (J4N44_14005)	recA	2967373..2968416 (-)	1044	WP_053050623.1	recombinase RecA	Machinery gene
J4N44_RS14080 (J4N44_14010)	pncC	2968618..2969100 (-)	483	WP_005452118.1	nicotinamide-nucleotide amidase	-
J4N44_RS14085 (J4N44_14015)	mutS	2969186..2971747 (+)	2562	WP_252044570.1	DNA mismatch repair protein MutS	-
J4N44_RS14090 (J4N44_14020)	rpoS	2971841..2972824 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
J4N44_RS14095 (J4N44_14025)	-	2972905..2973828 (-)	924	WP_252044571.1	peptidoglycan DD-metalloendopeptidase family protein	-
J4N44_RS14100 (J4N44_14030)	-	2973843..2974469 (-)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J4N44_RS14105 (J4N44_14035)	surE	2974469..2975245 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
J4N44_RS14110 (J4N44_14040)	truD	2975245..2976288 (-)	1044	WP_252044572.1	tRNA pseudouridine(13) synthase TruD	-
J4N44_RS14115 (J4N44_14045)	ispF	2976334..2976810 (-)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J4N44_RS14120 (J4N44_14050)	ispD	2976825..2977535 (-)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J4N44_RS14125 (J4N44_14055)	ftsB	2977537..2977818 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=548376 J4N44_RS14090 WP_005452115.1 2971841..2972824(-) (rpoS) [Vibrio sp. SCSIO 43155]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=548376 J4N44_RS14090 WP_005452115.1 2971841..2972824(-) (rpoS) [Vibrio sp. SCSIO 43155]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACTTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856