Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J4N43_RS02710 Genome accession   NZ_CP071842
Coordinates   563431..564474 (+) Length   347 a.a.
NCBI ID   WP_005380874.1    Uniprot ID   A0A2I3C9C1
Organism   Vibrio sp. SCSIO 43009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 558431..569474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N43_RS02695 (J4N43_02690) rpoS 559033..560019 (+) 987 WP_005380887.1 RNA polymerase sigma factor RpoS Regulator
  J4N43_RS02700 (J4N43_02695) mutS 560102..562663 (-) 2562 WP_033907432.1 DNA mismatch repair protein MutS -
  J4N43_RS02705 (J4N43_02700) pncC 562748..563230 (+) 483 WP_005383794.1 nicotinamide-nucleotide amidase -
  J4N43_RS02710 (J4N43_02705) recA 563431..564474 (+) 1044 WP_005380874.1 recombinase RecA Machinery gene
  J4N43_RS02715 (J4N43_02710) recX 564602..565069 (+) 468 WP_017633543.1 recombination regulator RecX -
  J4N43_RS02720 (J4N43_02715) alaS 565212..567794 (+) 2583 WP_158159774.1 alanine--tRNA ligase -
  J4N43_RS02725 (J4N43_02720) - 568007..569194 (+) 1188 WP_005383803.1 aspartate kinase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37290.75 Da        Isoelectric Point: 5.0618

>NTDB_id=548198 J4N43_RS02710 WP_005380874.1 563431..564474(+) (recA) [Vibrio sp. SCSIO 43009]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEVAKTIDT
KLREMLLAPALAEAPEAGEAPEQAEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=548198 J4N43_RS02710 WP_005380874.1 563431..564474(+) (recA) [Vibrio sp. SCSIO 43009]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGCCCAGAATCTTCAGGTAAAACAACATTAACGCTTGAGCTTATTGCT
GCTGCGCAACGTGAAGGCAAAACGTGTGCGTTTATCGATGCAGAGCATGCTCTAGATCCTGTATACGCGAAGAAACTTGG
CGTTGATATCGATGCATTGCTAGTTTCTCAGCCAGACACAGGTGAGCAAGCTCTAGAGATCTGTGACGCACTTGCACGTT
CTGGTGCTATCGATGTTATGGTTGTCGACTCTGTTGCAGCACTAACACCGAAAGCAGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTACAAGCACGTATGCTTTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACAACAGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTGGTAGGTAACGAA
ACGCGCATCAAAGTTGTTAAGAATAAGATTGCAGCACCATTTAAAGAAGCAAACACACAAATCATGTACGGCCAAGGCTT
TAACCGCGAAGGTGAACTTGTCGATCTAGGTGTGAAGCACAAGTTAGTTGAAAAAGCCGGTGCTTGGTATAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCGAATGCGTGTAACTACCTGCGTGAGCATCCTGAAGTGGCTAAAACTATCGATACA
AAACTGCGTGAAATGTTGCTAGCGCCAGCACTTGCGGAAGCGCCTGAAGCTGGTGAAGCGCCAGAGCAAGCTGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.137

94.813

0.902
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.137

94.813

0.902
  recA Acinetobacter baylyi ADP1

71.594

99.424

0.712
  recA Acinetobacter baumannii D1279779

74.924

94.236

0.706
  recA Pseudomonas stutzeri DSM 10701

74.618

94.236

0.703
  recA Glaesserella parasuis strain SC1401

70.679

93.372

0.66
  recA Neisseria gonorrhoeae MS11

65.33

100

0.657
  recA Neisseria gonorrhoeae MS11

65.33

100

0.657
  recA Neisseria gonorrhoeae strain FA1090

65.33

100

0.657
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.625

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.475

98.847

0.588
  recA Helicobacter pylori strain NCTC11637

61.774

94.236

0.582
  recA Streptococcus pneumoniae R6

62.539

93.084

0.582
  recA Streptococcus pneumoniae TIGR4

62.539

93.084

0.582
  recA Streptococcus pneumoniae D39

62.539

93.084

0.582
  recA Streptococcus pneumoniae Rx1

62.539

93.084

0.582
  recA Helicobacter pylori 26695

61.468

94.236

0.579
  recA Streptococcus mitis SK321

61.92

93.084

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

59.88

96.254

0.576
  recA Streptococcus pyogenes NZ131

61.538

93.66

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

92.507

0.573
  recA Streptococcus mitis NCTC 12261

61.61

93.084

0.573
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.682

92.507

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.991

93.084

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.159

95.965

0.568