Detailed information NTG0548196

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: J4N43_RS02695
• Genome accession: NZ_CP071842
• Coordinates: 559033..560019 (+)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio sp. SCSIO 43009
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 554033..565019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4N43_RS02660 (J4N43_02655)	ftsB	554043..554324 (+)	282	WP_005380907.1	cell division protein FtsB	-
J4N43_RS02665 (J4N43_02660)	ispD	554326..555033 (+)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
J4N43_RS02670 (J4N43_02665)	ispF	555048..555524 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
J4N43_RS02675 (J4N43_02670)	truD	555570..556613 (+)	1044	WP_053350720.1	tRNA pseudouridine(13) synthase TruD	-
J4N43_RS02680 (J4N43_02675)	surE	556613..557389 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
J4N43_RS02685 (J4N43_02680)	-	557389..558015 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
J4N43_RS02690 (J4N43_02685)	-	558029..558952 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
J4N43_RS02695 (J4N43_02690)	rpoS	559033..560019 (+)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
J4N43_RS02700 (J4N43_02695)	mutS	560102..562663 (-)	2562	WP_033907432.1	DNA mismatch repair protein MutS	-
J4N43_RS02705 (J4N43_02700)	pncC	562748..563230 (+)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
J4N43_RS02710 (J4N43_02705)	recA	563431..564474 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=548196 J4N43_RS02695 WP_005380887.1 559033..560019(+) (rpoS) [Vibrio sp. SCSIO 43009]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=548196 J4N43_RS02695 WP_005380887.1 559033..560019(+) (rpoS) [Vibrio sp. SCSIO 43009]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTATTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854