Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PSE7367_RS07020 Genome accession   NC_019701
Coordinates   1801459..1802604 (-) Length   381 a.a.
NCBI ID   WP_015164674.1    Uniprot ID   K9SHM3
Organism   Pseudanabaena sp. PCC 7367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1796459..1807604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSE7367_RS06995 (Pse7367_1407) - 1797361..1797807 (-) 447 WP_015164669.1 CopD family protein -
  PSE7367_RS07000 (Pse7367_1408) - 1798231..1798671 (+) 441 WP_015164670.1 SH3 domain-containing protein -
  PSE7367_RS07005 (Pse7367_1409) obgE 1798776..1799801 (+) 1026 Protein_1387 GTPase ObgE -
  PSE7367_RS07010 (Pse7367_1410) - 1800198..1800632 (+) 435 WP_015164672.1 hypothetical protein -
  PSE7367_RS07015 (Pse7367_1411) - 1800667..1801350 (-) 684 WP_041699239.1 HAD family hydrolase -
  PSE7367_RS07020 (Pse7367_1412) recA 1801459..1802604 (-) 1146 WP_015164674.1 recombinase RecA Machinery gene
  PSE7367_RS07025 (Pse7367_1413) - 1803430..1803903 (+) 474 WP_015164675.1 Npun_F0494 family protein -
  PSE7367_RS07030 (Pse7367_1414) - 1803919..1804989 (-) 1071 WP_015164676.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40806.65 Da        Isoelectric Point: 6.6592

>NTDB_id=54818 PSE7367_RS07020 WP_015164674.1 1801459..1802604(-) (recA) [Pseudanabaena sp. PCC 7367]
MAPAKSSTSAASNNSSNSSKASKSNAAAIDKKLDPEKKRALDVVLQKIEKDHGKGSIMRLGDAAAMRVATIPSGALTLDL
ALGGGLPRGRVIEVYGPESSGKTTLVLHAIAEVQKQGGIAAFVDAEHALDPTYAARVGVDIDNLLVSQPDTGEMALEIVD
QLVRSMAVDIVAIDSVAALVPRAEIEGEMGDSHMGLQARLMSQALRKITGNIGRSNCTVVFLNQLRQKIGISYGSPEVTT
GGTALKFYASVRLDIRRIQTLKKGAEEYGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISRMGCLLDLAEEMDIVTRRGAW
YSYNGDNLAQGRDNTIKHMEENLEFAQTVEKQVREKLALGTQVSAMVPGAPDADEETAEEF

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=54818 PSE7367_RS07020 WP_015164674.1 1801459..1802604(-) (recA) [Pseudanabaena sp. PCC 7367]
ATGGCACCTGCAAAATCCAGCACTTCGGCAGCTTCTAATAATTCGTCTAATTCTTCTAAGGCCAGCAAGTCCAACGCGGC
GGCGATCGACAAAAAGCTAGATCCCGAAAAGAAACGCGCTTTAGACGTGGTCTTACAAAAGATCGAAAAGGATCACGGCA
AAGGCTCGATCATGCGTTTGGGTGATGCGGCGGCAATGCGGGTAGCCACGATCCCCAGTGGCGCGCTGACGTTGGATCTA
GCCCTTGGTGGTGGTCTGCCCCGTGGCCGTGTCATCGAGGTCTATGGCCCAGAAAGTTCCGGTAAAACCACGCTGGTGCT
CCATGCGATTGCCGAGGTGCAAAAACAGGGCGGGATCGCTGCGTTTGTGGATGCTGAACATGCCCTCGATCCCACCTATG
CGGCCAGGGTCGGTGTAGATATTGATAATTTGCTGGTGTCGCAGCCGGATACAGGCGAAATGGCGCTGGAAATAGTCGAT
CAACTGGTGCGATCGATGGCGGTGGACATTGTGGCGATCGACTCGGTGGCGGCGCTGGTTCCCCGTGCTGAGATCGAAGG
GGAAATGGGCGATTCCCACATGGGATTGCAAGCCCGATTGATGAGCCAGGCTTTGCGTAAAATCACTGGGAATATTGGTC
GCTCCAATTGCACGGTAGTGTTTTTGAATCAATTGCGCCAGAAAATTGGTATTTCCTACGGATCGCCAGAGGTAACCACC
GGTGGGACGGCGCTGAAGTTCTATGCCTCGGTGCGGTTGGATATCCGCCGCATTCAAACCCTCAAAAAAGGTGCAGAAGA
ATATGGCATTCGTGCCAAGGTGAAGGTGGCCAAGAATAAGGTTGCGCCGCCATTCCGGATCGCTGAGTTCGATATTATTT
TTGGTAAGGGTATTTCCCGCATGGGTTGTTTGCTCGACCTGGCCGAGGAGATGGATATTGTGACGCGGCGTGGTGCTTGG
TATAGCTACAATGGCGACAATCTGGCGCAGGGACGCGATAACACGATCAAGCATATGGAAGAGAATTTGGAGTTTGCCCA
AACCGTTGAAAAGCAGGTGCGGGAAAAACTGGCTTTGGGTACCCAGGTCTCGGCGATGGTTCCCGGTGCGCCCGATGCCG
ATGAAGAGACTGCGGAGGAATTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(39-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9SHM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

57.104

96.063

0.549
  recA Acinetobacter baumannii D1279779

63.497

85.564

0.543
  recA Pseudomonas stutzeri DSM 10701

60.411

89.501

0.541
  recA Acinetobacter baylyi ADP1

62.883

85.564

0.538
  recA Ralstonia pseudosolanacearum GMI1000

64.537

82.152

0.53
  recA Bacillus subtilis subsp. subtilis str. 168

60.923

85.302

0.52
  recA Latilactobacillus sakei subsp. sakei 23K

56.936

90.814

0.517
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.123

85.564

0.514
  recA Vibrio cholerae strain A1552

60.123

85.564

0.514
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.358

90.814

0.512
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.967

86.352

0.509
  recA Neisseria gonorrhoeae MS11

59.259

85.039

0.504
  recA Neisseria gonorrhoeae MS11

59.259

85.039

0.504
  recA Neisseria gonorrhoeae strain FA1090

59.259

85.039

0.504
  recA Helicobacter pylori strain NCTC11637

56.012

89.501

0.501
  recA Helicobacter pylori 26695

56.012

89.501

0.501
  recA Streptococcus pneumoniae D39

55.685

90.026

0.501
  recA Streptococcus pneumoniae R6

55.685

90.026

0.501
  recA Streptococcus pneumoniae TIGR4

55.685

90.026

0.501
  recA Streptococcus pneumoniae Rx1

55.685

90.026

0.501
  recA Streptococcus mutans UA159

55.655

88.189

0.491
  recA Streptococcus mitis SK321

55.357

88.189

0.488
  recA Streptococcus mitis NCTC 12261

55.357

88.189

0.488
  recA Lactococcus lactis subsp. cremoris KW2

54.599

88.451

0.483
  recA Streptococcus pyogenes NZ131

54.491

87.664

0.478
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.959

88.714

0.47

Multiple sequence alignment