Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   EXW53_RS18100 Genome accession   NZ_CP071808
Coordinates   3541524..3541949 (-) Length   141 a.a.
NCBI ID   WP_002111333.1    Uniprot ID   A0A1W6ABW2
Organism   Bacillus mycoides strain JAS014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3536524..3546949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW53_RS18080 (EXW53_18135) - 3537035..3537958 (-) 924 WP_002111329.1 dipeptidase -
  EXW53_RS18085 (EXW53_18140) spoVS 3538018..3538278 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  EXW53_RS18090 (EXW53_18145) - 3538428..3539222 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  EXW53_RS18095 (EXW53_18150) rny 3539478..3541040 (-) 1563 WP_002111330.1 ribonuclease Y -
  EXW53_RS18100 (EXW53_18155) recA 3541524..3541949 (-) 426 WP_002111333.1 recombinase RecA Machinery gene
  EXW53_RS18105 (EXW53_18160) - 3542216..3542839 (-) 624 WP_070139860.1 topoisomerase I -
  EXW53_RS18110 (EXW53_18165) recA 3542937..3543545 (-) 609 Protein_3546 recombinase RecA -
  EXW53_RS18115 (EXW53_18170) cinA 3543689..3544927 (-) 1239 WP_215557374.1 competence/damage-inducible protein A Machinery gene
  EXW53_RS18120 (EXW53_18175) pgsA 3544948..3545526 (-) 579 WP_002199554.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW53_RS18125 (EXW53_18180) - 3545590..3546501 (-) 912 WP_215557375.1 helix-turn-helix domain-containing protein -

Sequence


Protein


Download         Length: 141 a.a.        Molecular weight: 15991.81 Da        Isoelectric Point: 4.9286

>NTDB_id=548014 EXW53_RS18100 WP_002111333.1 3541524..3541949(-) (recA) [Bacillus mycoides strain JAS014]
MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIV
QKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD

Nucleotide


Download         Length: 426 bp        

>NTDB_id=548014 EXW53_RS18100 WP_002111333.1 3541524..3541949(-) (recA) [Bacillus mycoides strain JAS014]
GTGCCAGAAACAACTCCAGGTGGTCGTGCGTTGAAATTCTATTCAACTGTCCGTCTTGAAGTACGTCGTGCTGAGCAATT
AAAGCAAGGTAATGACATCGTTGGTAATAAAACGAAAGTAAAAGTAGTTAAAAATAAAGTTGCACCGCCATTCCGTGTTG
CTGAAGTTGATATTATGTACGGAGAAGGTATTTCAAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTT
CAAAAGAGCGGTGCTTGGTACTCTTATAATGAAGAACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGA
GAATACGGATTTAAGAGAAGAAATTGCCTTCTTTGTTCGTGAACATCACGGAATTGGTGAAAACTCTGGTGTTGAAGACA
CGGAAGATTCAACTCGTCAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1W6ABW2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

79.231

92.199

0.73

  recA Latilactobacillus sakei subsp. sakei 23K

65.873

89.362

0.589

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.481

95.745

0.589

  recA Streptococcus pneumoniae TIGR4

56.738

100

0.567

  recA Streptococcus pneumoniae Rx1

56.738

100

0.567

  recA Streptococcus pneumoniae D39

56.738

100

0.567

  recA Streptococcus pneumoniae R6

56.738

100

0.567

  recA Ralstonia pseudosolanacearum GMI1000

63.71

87.943

0.56

  recA Streptococcus mutans UA159

55.714

99.291

0.553

  recA Helicobacter pylori 26695

60.63

90.071

0.546

  recA Helicobacter pylori strain NCTC11637

60.63

90.071

0.546

  recA Streptococcus pyogenes NZ131

60.63

90.071

0.546

  recA Neisseria gonorrhoeae MS11

55.474

97.163

0.539

  recA Neisseria gonorrhoeae MS11

55.474

97.163

0.539

  recA Neisseria gonorrhoeae strain FA1090

55.474

97.163

0.539

  recA Streptococcus mitis NCTC 12261

58.594

90.78

0.532

  recA Streptococcus mitis SK321

58.594

90.78

0.532

  recA Lactococcus lactis subsp. cremoris KW2

55.97

95.035

0.532

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.8

88.652

0.504

  recA Acinetobacter baumannii D1279779

50

99.291

0.496

  recA Glaesserella parasuis strain SC1401

50.376

94.326

0.475

  recA Acinetobacter baylyi ADP1

53.719

85.816

0.461

  recA Pseudomonas stutzeri DSM 10701

55.263

80.851

0.447

  recA Vibrio cholerae O1 biovar El Tor strain E7946

51.667

85.106

0.44

  recA Vibrio cholerae strain A1552

51.667

85.106

0.44

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.826

81.56

0.39