Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EXW53_RS18115 Genome accession   NZ_CP071808
Coordinates   3543689..3544927 (-) Length   412 a.a.
NCBI ID   WP_215557374.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS014     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3538689..3549927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW53_RS18095 (EXW53_18150) rny 3539478..3541040 (-) 1563 WP_002111330.1 ribonuclease Y -
  EXW53_RS18100 (EXW53_18155) recA 3541524..3541949 (-) 426 WP_002111333.1 recombinase RecA Machinery gene
  EXW53_RS18105 (EXW53_18160) - 3542216..3542839 (-) 624 WP_070139860.1 topoisomerase I -
  EXW53_RS18110 (EXW53_18165) recA 3542937..3543545 (-) 609 Protein_3546 recombinase RecA -
  EXW53_RS18115 (EXW53_18170) cinA 3543689..3544927 (-) 1239 WP_215557374.1 competence/damage-inducible protein A Machinery gene
  EXW53_RS18120 (EXW53_18175) pgsA 3544948..3545526 (-) 579 WP_002199554.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXW53_RS18125 (EXW53_18180) - 3545590..3546501 (-) 912 WP_215557375.1 helix-turn-helix domain-containing protein -
  EXW53_RS18130 (EXW53_18185) - 3546523..3547308 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  EXW53_RS18135 (EXW53_18190) - 3547448..3547696 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  EXW53_RS18140 (EXW53_18195) - 3547772..3548485 (-) 714 WP_002111338.1 SDR family oxidoreductase -
  EXW53_RS18145 (EXW53_18200) - 3548602..3549888 (-) 1287 WP_002111339.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45534.99 Da        Isoelectric Point: 5.5017

>NTDB_id=548015 EXW53_RS18115 WP_215557374.1 3543689..3544927(-) (cinA) [Bacillus mycoides strain JAS014]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDAAEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKKLLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=548015 EXW53_RS18115 WP_215557374.1 3543689..3544927(-) (cinA) [Bacillus mycoides strain JAS014]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTCGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGCTGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TCTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGCACTGACGGGGCGGTTAGTAAACAGTGTGCTCGTTATCTTGCTGAAAATGTAAAGAAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAACATAAAGAGCCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.466

100

0.595
  cinA Streptococcus mitis SK321

46.062

100

0.468
  cinA Streptococcus pneumoniae TIGR4

46.062

100

0.468
  cinA Streptococcus pneumoniae Rx1

45.585

100

0.464
  cinA Streptococcus pneumoniae R6

45.585

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.346

100

0.461
  cinA Streptococcus pneumoniae D39

45.346

100

0.461
  cinA Streptococcus mutans UA159

46.552

98.544

0.459
  cinA Streptococcus suis isolate S10

41.223

91.262

0.376