Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J3U78_RS05430 Genome accession   NZ_CP071798
Coordinates   1057118..1058179 (-) Length   353 a.a.
NCBI ID   WP_184206623.1    Uniprot ID   A0A975CAS3
Organism   Sporosarcina sp. Te-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052118..1063179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3U78_RS05410 (J3U78_05410) miaB 1052221..1053771 (-) 1551 WP_207961954.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  J3U78_RS05415 (J3U78_05415) - 1054001..1054270 (-) 270 WP_207961955.1 stage V sporulation protein S -
  J3U78_RS05420 (J3U78_05420) - 1054359..1055156 (-) 798 WP_207961956.1 TIGR00282 family metallophosphoesterase -
  J3U78_RS05425 (J3U78_05425) rny 1055221..1056777 (-) 1557 WP_207961957.1 ribonuclease Y -
  J3U78_RS05430 (J3U78_05430) recA 1057118..1058179 (-) 1062 WP_184206623.1 recombinase RecA Machinery gene
  J3U78_RS05435 (J3U78_05435) cinA 1058403..1059638 (-) 1236 WP_207961958.1 competence/damage-inducible protein A Machinery gene
  J3U78_RS05440 (J3U78_05440) pgsA 1059656..1060234 (-) 579 WP_207961960.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J3U78_RS05445 (J3U78_05445) - 1060303..1061190 (-) 888 WP_207961962.1 RodZ family helix-turn-helix domain-containing protein -
  J3U78_RS05450 (J3U78_05450) - 1061211..1062008 (-) 798 WP_207961965.1 YmfK family protein -
  J3U78_RS05455 (J3U78_05455) ymfI 1062142..1062867 (-) 726 WP_207961967.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38097.02 Da        Isoelectric Point: 4.7494

>NTDB_id=547859 J3U78_RS05430 WP_184206623.1 1057118..1058179(-) (recA) [Sporosarcina sp. Te-1]
MSDRKAALDQALKQIEKQFGKGSVMKLGEQTDRQISTSSSGSLALDAALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRGEAIKSGNDINGNKT
RIRVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDLGAELEVVQKSGAWYSYEGERLGQGRENAKQFLKENPDIRAEIANK
IRDSYGLASANYVIAGHDEEEEEELELFLDKEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=547859 J3U78_RS05430 WP_184206623.1 1057118..1058179(-) (recA) [Sporosarcina sp. Te-1]
TTGAGCGATCGTAAAGCTGCGTTAGACCAAGCTTTGAAACAAATTGAAAAACAATTCGGCAAAGGTTCAGTTATGAAACT
GGGGGAACAAACGGATCGACAAATCTCCACTTCATCATCAGGTTCATTGGCACTGGATGCGGCACTTGGAGTAGGCGGAT
ATCCACGTGGACGCGTTATTGAAATATACGGCCCTGAGAGTTCGGGTAAGACGACAGTCGCTCTTCATGCGATTGCAGAA
GTTCAAGCATCTGGAGGACAAGCTGCATTCATTGATGCCGAGCACGCGCTTGATCCTGTCTATGCACAGAAACTAGGGGT
AAATATCGACGAGTTGCTTTTATCCCAACCGGACACAGGCGAGCAGGCGCTTGAAATCGCCGAGGCGTTAGTGCGCAGTG
GAGCGATTGATATTATCGTCATCGACTCTGTTGCTGCGCTCGTGCCGAAAGCCGAGATTGAAGGAGAGATGGGGGATTCG
CATGTCGGTTTGCAAGCGCGTCTGATGTCCCAAGCGCTCCGTAAGTTGTCAGGCGCTATCAATAAATCGAAGACGATCGC
TGTCTTCATTAACCAAATCCGTGAAAAAGTCGGCGTCATGTTCGGAAATCCGGAAGTCACACCAGGGGGGCGCGCATTGA
AATTCTACTCCTCCGTACGTCTGGAAGTCCGGAGAGGAGAAGCGATCAAGTCCGGAAACGATATTAACGGTAACAAAACA
CGTATCCGTGTTGTGAAAAACAAAGTAGCACCGCCTTTCCGTACAGCTGAAGTCGATATCATGTACGGGGAAGGCATTTC
GAAAGAAGGCGAAATCGTGGACCTTGGAGCTGAATTGGAGGTCGTCCAAAAGAGCGGCGCTTGGTATTCCTATGAAGGCG
AACGTCTTGGCCAAGGCCGTGAGAATGCGAAGCAATTCTTGAAAGAAAATCCTGATATCCGTGCCGAGATTGCAAATAAA
ATCCGGGACTCTTACGGATTGGCAAGCGCAAATTATGTGATTGCAGGCCATGATGAAGAGGAAGAAGAGGAATTGGAACT
ATTTCTTGATAAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.635

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

74.54

92.351

0.688
  recA Streptococcus pyogenes NZ131

64.489

99.717

0.643
  recA Streptococcus mutans UA159

68.693

93.201

0.64
  recA Streptococcus pneumoniae D39

64.265

98.3

0.632
  recA Streptococcus pneumoniae Rx1

64.265

98.3

0.632
  recA Streptococcus pneumoniae R6

64.265

98.3

0.632
  recA Streptococcus pneumoniae TIGR4

64.265

98.3

0.632
  recA Streptococcus mitis SK321

66.667

93.484

0.623
  recA Streptococcus mitis NCTC 12261

66.667

93.484

0.623
  recA Lactococcus lactis subsp. cremoris KW2

66.061

93.484

0.618
  recA Neisseria gonorrhoeae strain FA1090

66.667

91.785

0.612
  recA Neisseria gonorrhoeae MS11

66.667

91.785

0.612
  recA Neisseria gonorrhoeae MS11

66.667

91.785

0.612
  recA Acinetobacter baylyi ADP1

62.5

97.45

0.609
  recA Ralstonia pseudosolanacearum GMI1000

64.939

92.918

0.603
  recA Glaesserella parasuis strain SC1401

59.829

99.433

0.595
  recA Acinetobacter baumannii D1279779

60.641

97.167

0.589
  recA Pseudomonas stutzeri DSM 10701

62.918

93.201

0.586
  recA Helicobacter pylori strain NCTC11637

60

97.734

0.586
  recA Helicobacter pylori 26695

59.71

97.734

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.058

97.167

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

90.935

0.584
  recA Vibrio cholerae strain A1552

64.174

90.935

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.856

92.635

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.688

90.652

0.541