Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J3U78_RS05435 Genome accession   NZ_CP071798
Coordinates   1058403..1059638 (-) Length   411 a.a.
NCBI ID   WP_207961958.1    Uniprot ID   A0A975CCK3
Organism   Sporosarcina sp. Te-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1053403..1064638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3U78_RS05415 (J3U78_05415) - 1054001..1054270 (-) 270 WP_207961955.1 stage V sporulation protein S -
  J3U78_RS05420 (J3U78_05420) - 1054359..1055156 (-) 798 WP_207961956.1 TIGR00282 family metallophosphoesterase -
  J3U78_RS05425 (J3U78_05425) rny 1055221..1056777 (-) 1557 WP_207961957.1 ribonuclease Y -
  J3U78_RS05430 (J3U78_05430) recA 1057118..1058179 (-) 1062 WP_184206623.1 recombinase RecA Machinery gene
  J3U78_RS05435 (J3U78_05435) cinA 1058403..1059638 (-) 1236 WP_207961958.1 competence/damage-inducible protein A Machinery gene
  J3U78_RS05440 (J3U78_05440) pgsA 1059656..1060234 (-) 579 WP_207961960.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J3U78_RS05445 (J3U78_05445) - 1060303..1061190 (-) 888 WP_207961962.1 RodZ family helix-turn-helix domain-containing protein -
  J3U78_RS05450 (J3U78_05450) - 1061211..1062008 (-) 798 WP_207961965.1 YmfK family protein -
  J3U78_RS05455 (J3U78_05455) ymfI 1062142..1062867 (-) 726 WP_207961967.1 elongation factor P 5-aminopentanone reductase -
  J3U78_RS05460 (J3U78_05460) yfmH 1062872..1064170 (-) 1299 WP_207964209.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44541.00 Da        Isoelectric Point: 4.9516

>NTDB_id=547860 J3U78_RS05435 WP_207961958.1 1058403..1059638(-) (cinA) [Sporosarcina sp. Te-1]
MKAEIIAVGSELLLGQITNTNGAFISQKLAEIGVDIYYHTVVGDNPKRLDEAIAIAQKRADTIIFTGGLGPTKDDLTKET
IASRLGVSLVSNEEALTEIKAYFERTGRLMTENNKKQALVLEGSHVLPNRHGMAPGMALEKDEIRYILLPGPPHEMKPMF
EQEAIPFLLGALGKNEVITSRVLKFYGIGEAELEDRVQLILDKQENPTVAPLASPDAVTLRLTAKAESFEAAERLMAPVE
DEIRGMVGDFIYGTDEDTLSSKAAELLLKRGLSIAAAESMTAGLFLAELTSEAGISAALKGGVIVYDKEAKVEQLDISRS
LLDEFGVVSKECAAALATQVKRKFQSDIGVGLTGVAGPDPHDNQPVGTVWIGISLYDGTVETYKLSLSGSRNSNRRRAAH
YALYYLIKHLQ

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=547860 J3U78_RS05435 WP_207961958.1 1058403..1059638(-) (cinA) [Sporosarcina sp. Te-1]
ATGAAAGCTGAAATTATTGCGGTTGGTTCCGAATTGCTGTTAGGTCAGATTACAAATACCAATGGAGCGTTCATTTCACA
GAAACTGGCGGAAATCGGAGTCGACATCTACTATCATACTGTCGTAGGAGATAATCCGAAGCGATTAGATGAGGCGATTG
CAATTGCCCAAAAGCGAGCGGACACAATTATCTTTACTGGCGGATTAGGGCCGACAAAGGATGACCTGACGAAGGAAACA
ATCGCTTCCAGATTAGGTGTTTCCCTTGTCAGCAACGAGGAAGCCCTCACTGAAATCAAAGCCTATTTCGAACGTACTGG
CCGCTTGATGACAGAAAACAACAAAAAGCAGGCCCTCGTATTAGAAGGATCCCATGTCTTGCCAAACAGACACGGCATGG
CACCCGGTATGGCCTTGGAGAAAGACGAAATCCGCTATATCTTATTGCCTGGACCTCCACATGAGATGAAGCCCATGTTT
GAGCAGGAGGCAATCCCCTTTTTACTCGGCGCGTTAGGAAAAAATGAAGTGATCACTTCGAGGGTATTGAAGTTTTACGG
AATCGGAGAAGCGGAACTAGAAGATCGTGTCCAATTAATACTCGACAAGCAAGAAAATCCGACTGTGGCGCCGCTTGCTT
CCCCTGATGCTGTTACCTTGAGGTTGACCGCAAAAGCAGAGTCCTTTGAAGCAGCAGAACGGTTGATGGCTCCGGTTGAG
GACGAAATCCGCGGCATGGTTGGCGATTTCATTTACGGCACTGATGAGGATACATTATCCTCCAAAGCTGCCGAATTACT
TTTAAAACGTGGGTTGTCCATTGCTGCAGCTGAAAGCATGACAGCTGGTCTGTTTCTTGCTGAGCTTACGAGTGAGGCCG
GCATCAGTGCTGCCTTAAAAGGCGGCGTTATCGTCTACGACAAAGAGGCAAAGGTGGAGCAGCTGGACATTTCCCGCTCA
TTGCTCGATGAATTTGGAGTTGTGAGCAAGGAATGCGCCGCAGCACTTGCAACGCAAGTGAAACGGAAATTCCAATCTGA
CATTGGTGTTGGCTTAACGGGCGTGGCAGGACCTGATCCGCATGATAACCAACCGGTCGGAACCGTATGGATTGGGATCT
CGTTATATGACGGAACAGTCGAAACGTATAAACTATCGTTATCTGGTTCCAGAAATTCCAATCGCCGAAGAGCTGCTCAC
TATGCGTTATATTATTTGATAAAACATCTGCAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.171

99.757

0.53
  cinA Streptococcus pneumoniae TIGR4

45.084

100

0.457
  cinA Streptococcus pneumoniae R6

44.604

100

0.453
  cinA Streptococcus pneumoniae Rx1

44.604

100

0.453
  cinA Streptococcus mitis SK321

44.365

100

0.45
  cinA Streptococcus mitis NCTC 12261

44.365

100

0.45
  cinA Streptococcus pneumoniae D39

44.365

100

0.45
  cinA Streptococcus mutans UA159

41.889

100

0.421
  cinA Streptococcus suis isolate S10

37.046

100

0.372