Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J1899_RS10050 Genome accession   NZ_CP071709
Coordinates   2034520..2035557 (+) Length   345 a.a.
NCBI ID   WP_066446409.1    Uniprot ID   -
Organism   Cytobacillus gottheilii strain 1839     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2029520..2040557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1899_RS10025 (J1899_10030) - 2030091..2030348 (+) 258 WP_214478544.1 DUF3243 domain-containing protein -
  J1899_RS10030 (J1899_10035) - 2030570..2031361 (+) 792 WP_066446417.1 DUF3388 domain-containing protein -
  J1899_RS10035 (J1899_10040) - 2031382..2032302 (+) 921 WP_214478545.1 RodZ domain-containing protein -
  J1899_RS10040 (J1899_10045) pgsA 2032369..2032950 (+) 582 WP_066446413.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J1899_RS10045 (J1899_10050) cinA 2032972..2034210 (+) 1239 WP_066446411.1 competence/damage-inducible protein A Machinery gene
  J1899_RS10050 (J1899_10055) recA 2034520..2035557 (+) 1038 WP_066446409.1 recombinase RecA Machinery gene
  J1899_RS10055 (J1899_10060) rny 2035946..2037505 (+) 1560 WP_066446406.1 ribonuclease Y -
  J1899_RS10060 (J1899_10065) - 2037702..2038499 (+) 798 WP_066446404.1 TIGR00282 family metallophosphoesterase -
  J1899_RS10065 (J1899_10070) spoVS 2038734..2038994 (+) 261 WP_066446403.1 stage V sporulation protein SpoVS -
  J1899_RS10070 (J1899_10075) - 2039160..2040083 (+) 924 WP_214478546.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37652.82 Da        Isoelectric Point: 4.9184

>NTDB_id=547201 J1899_RS10050 WP_066446409.1 2034520..2035557(+) (recA) [Cytobacillus gottheilii strain 1839]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQADQKVSAVPSGSLALDAALGIGGYPRGRIIETYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAETLKQGNEMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSEVDIVQKSGSWYSYNEERLGQGRENAKQFLKENPEIRKQIQQQ
IREHYGLDAEYTVTEEKEQEEFDLI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=547201 J1899_RS10050 WP_066446409.1 2034520..2035557(+) (recA) [Cytobacillus gottheilii strain 1839]
GTGAGTGATCGTCAGGCAGCACTTGAAATGGCATTAAAGCAAATAGAAAAGCAATTTGGTAAAGGTTCAATTATGAAACT
GGGCGAACAGGCAGATCAAAAAGTATCTGCTGTCCCAAGCGGATCCTTGGCGCTTGATGCTGCTCTTGGAATAGGCGGAT
ATCCGCGCGGAAGAATTATTGAAACATACGGCCCTGAAAGCTCAGGTAAAACAACTGTTGCACTTCATGCTATCGCAGAG
GTTCAGGCACAAGGCGGACAGGCTGCATTTATTGATGCTGAGCATGCGCTTGATCCGGTATATGCTCAAAAGCTGGGTGT
AAACATTGATGAACTGCTATTATCTCAGCCTGATACAGGTGAACAGGCACTTGAGATTGCTGAAGCTCTTGTCCGAAGCG
GTGCAGTAGATATTCTAGTAATTGACTCGGTTGCGGCTCTTGTACCAAAAGCTGAGATTGAAGGGGAAATGGGTGACTCC
CACGTTGGTTTACAGGCTCGCTTAATGTCCCAGGCACTTCGTAAGCTTTCTGGTGCTATTAATAAATCCAAAACGATTGC
TATCTTTATTAACCAGATTCGTGAAAAAGTCGGTGTTATGTTCGGTAACCCTGAAACAACTCCAGGTGGACGTGCTTTAA
AGTTCTATTCTACTATTCGTCTGGAAGTGCGCCGTGCTGAAACATTAAAACAAGGCAATGAAATGGTCGGTAACAAGACT
AAAATTAAAGTAGTTAAGAATAAAGTTGCTCCTCCATTCCGTGTAGCTGAAGTGGATATCATGTACGGTGAGGGGATTTC
TAAAGAAGGAGAAATCATTGATCTTGGCTCTGAAGTTGATATTGTTCAAAAGAGCGGATCATGGTATTCCTACAACGAGG
AACGTTTAGGCCAAGGCCGTGAGAACGCGAAGCAGTTCTTAAAAGAAAACCCTGAAATTCGCAAGCAAATTCAGCAGCAA
ATTCGCGAACACTACGGTTTAGATGCTGAATACACAGTGACAGAGGAAAAAGAACAAGAAGAGTTCGACTTAATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.854

95.072

0.864
  recA Latilactobacillus sakei subsp. sakei 23K

75.385

94.203

0.71
  recA Streptococcus pneumoniae TIGR4

67.052

100

0.672
  recA Streptococcus pneumoniae Rx1

67.052

100

0.672
  recA Streptococcus pneumoniae D39

67.052

100

0.672
  recA Streptococcus pneumoniae R6

67.052

100

0.672
  recA Streptococcus mitis NCTC 12261

67.638

99.42

0.672
  recA Streptococcus mitis SK321

67.347

99.42

0.67
  recA Streptococcus mutans UA159

67.941

98.551

0.67
  recA Streptococcus pyogenes NZ131

67.988

95.072

0.646
  recA Lactococcus lactis subsp. cremoris KW2

67.273

95.652

0.643
  recA Neisseria gonorrhoeae strain FA1090

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Ralstonia pseudosolanacearum GMI1000

66.055

94.783

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.765

98.551

0.609
  recA Acinetobacter baylyi ADP1

60.756

99.71

0.606
  recA Vibrio cholerae strain A1552

65.109

93.043

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

93.043

0.606
  recA Acinetobacter baumannii D1279779

60.35

99.42

0.6
  recA Helicobacter pylori strain NCTC11637

60.526

99.13

0.6
  recA Helicobacter pylori 26695

60.234

99.13

0.597
  recA Glaesserella parasuis strain SC1401

63.95

92.464

0.591
  recA Pseudomonas stutzeri DSM 10701

63.75

92.754

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.774

94.783

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.754

0.562