Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   J1899_RS10045 Genome accession   NZ_CP071709
Coordinates   2032972..2034210 (+) Length   412 a.a.
NCBI ID   WP_066446411.1    Uniprot ID   -
Organism   Cytobacillus gottheilii strain 1839     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2027972..2039210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1899_RS10020 (J1899_10025) - 2029253..2029975 (+) 723 WP_066446421.1 SDR family oxidoreductase -
  J1899_RS10025 (J1899_10030) - 2030091..2030348 (+) 258 WP_214478544.1 DUF3243 domain-containing protein -
  J1899_RS10030 (J1899_10035) - 2030570..2031361 (+) 792 WP_066446417.1 DUF3388 domain-containing protein -
  J1899_RS10035 (J1899_10040) - 2031382..2032302 (+) 921 WP_214478545.1 RodZ domain-containing protein -
  J1899_RS10040 (J1899_10045) pgsA 2032369..2032950 (+) 582 WP_066446413.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J1899_RS10045 (J1899_10050) cinA 2032972..2034210 (+) 1239 WP_066446411.1 competence/damage-inducible protein A Machinery gene
  J1899_RS10050 (J1899_10055) recA 2034520..2035557 (+) 1038 WP_066446409.1 recombinase RecA Machinery gene
  J1899_RS10055 (J1899_10060) rny 2035946..2037505 (+) 1560 WP_066446406.1 ribonuclease Y -
  J1899_RS10060 (J1899_10065) - 2037702..2038499 (+) 798 WP_066446404.1 TIGR00282 family metallophosphoesterase -
  J1899_RS10065 (J1899_10070) spoVS 2038734..2038994 (+) 261 WP_066446403.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45258.91 Da        Isoelectric Point: 4.8862

>NTDB_id=547200 J1899_RS10045 WP_066446411.1 2032972..2034210(+) (cinA) [Cytobacillus gottheilii strain 1839]
MNAEIIAVGSELLLGQIVNTNARFISRQLADIGVNVYFHTAVGDNPDRLKSAIEIAENRADLIIFTGGLGPTKDDLTKET
IARHLNTVLQMDDDALTSIEQYFNRTGRPMTENNKKQALILKGSEVLPNEHGMAPGMIYKKDECFYMLLPGPPKEMEPMF
LKFAYPSLRSKLGSYEVIASRVLRFFGIGEAMLETEIEDLIDGQSNPTIAPLAGDGEVTLRITAKHADLQVAHQLIDETE
EKIRKRVGEFIYGYDDSSLMEELIKLLKEKELTIAAAESLTGGMFQQEFTSIPGAGSLLKGGIVCYTNEVKANILQVKEE
TIQTCGVVSSECALEMAENAAKLMNADVGISFTGVAGPDELEGHPVGTVYIGLYQKGKKTRVEKLNLGGSRAANRIRSIK
YGCHFLLSYIQE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=547200 J1899_RS10045 WP_066446411.1 2032972..2034210(+) (cinA) [Cytobacillus gottheilii strain 1839]
ATGAACGCAGAAATTATTGCGGTTGGATCCGAGCTTTTGCTCGGTCAGATTGTGAATACTAACGCACGGTTTATTTCCAG
ACAGCTGGCAGACATTGGGGTTAATGTGTATTTTCACACCGCTGTCGGAGACAATCCAGATCGACTGAAGTCAGCGATTG
AAATAGCTGAAAACAGAGCTGATCTTATTATTTTTACAGGCGGACTCGGACCTACAAAGGATGATTTAACAAAGGAAACC
ATTGCCCGTCACCTGAATACAGTTCTGCAAATGGATGATGATGCACTTACGTCGATCGAACAGTATTTTAATAGAACCGG
ACGTCCAATGACAGAGAATAACAAAAAGCAAGCCCTCATCTTAAAGGGTTCAGAAGTGCTGCCAAATGAGCATGGCATGG
CACCGGGAATGATTTATAAAAAAGATGAGTGCTTCTATATGCTGCTTCCAGGGCCTCCAAAGGAAATGGAGCCGATGTTT
CTTAAATTTGCTTACCCGTCTCTGCGCTCAAAACTTGGATCTTACGAGGTCATTGCTTCAAGGGTTTTACGCTTTTTCGG
CATTGGAGAGGCTATGCTGGAAACTGAAATTGAAGATCTGATTGATGGCCAAAGCAACCCGACCATTGCCCCGCTTGCCG
GAGATGGAGAAGTTACACTAAGGATTACAGCAAAACATGCCGACCTGCAAGTAGCACACCAGCTAATTGATGAAACAGAA
GAGAAAATCAGAAAACGGGTTGGCGAATTTATCTACGGTTATGACGACAGTTCACTTATGGAAGAGCTGATCAAGCTCCT
AAAAGAAAAGGAATTGACCATTGCCGCAGCCGAAAGTTTAACAGGAGGCATGTTTCAGCAGGAGTTCACATCGATCCCTG
GTGCTGGCAGCCTGTTAAAAGGCGGAATTGTCTGCTATACAAACGAAGTGAAAGCTAATATTTTACAAGTAAAAGAAGAA
ACGATTCAAACGTGTGGTGTTGTAAGCAGTGAGTGTGCGCTTGAGATGGCTGAAAATGCAGCAAAGCTGATGAATGCAGA
TGTCGGCATTAGTTTTACTGGCGTTGCCGGACCAGATGAATTAGAAGGACACCCTGTTGGCACAGTCTATATTGGTCTCT
ATCAAAAAGGGAAAAAGACCAGAGTGGAAAAGTTAAACTTAGGCGGCTCAAGAGCAGCCAATCGCATAAGAAGCATAAAA
TATGGCTGTCACTTTTTGCTGAGCTATATTCAGGAGTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.488

99.515

0.602
  cinA Streptococcus mitis SK321

47.837

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.837

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.356

100

0.478
  cinA Streptococcus pneumoniae R6

47.356

100

0.478
  cinA Streptococcus pneumoniae D39

47.115

100

0.476
  cinA Streptococcus mitis NCTC 12261

47.115

100

0.476
  cinA Streptococcus mutans UA159

46.898

97.816

0.459
  cinA Streptococcus suis isolate S10

38.422

95.388

0.367