Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J0W34_RS02345 Genome accession   NZ_CP071321
Coordinates   501610..502653 (-) Length   347 a.a.
NCBI ID   WP_227815413.1    Uniprot ID   -
Organism   Nitrogeniibacter aestuarii strain H1-1-2A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 496610..507653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0W34_RS02310 - 496812..497045 (-) 234 WP_230970536.1 PsiF family protein -
  J0W34_RS02315 hprK 497169..498107 (-) 939 WP_227815407.1 HPr(Ser) kinase/phosphatase -
  J0W34_RS02320 ptsN 498076..498561 (-) 486 WP_227815408.1 PTS IIA-like nitrogen regulatory protein PtsN -
  J0W34_RS02325 hpf 498679..499002 (-) 324 WP_227815409.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  J0W34_RS02330 rpoN/rpoN1 499017..500429 (-) 1413 WP_230970537.1 RNA polymerase factor sigma-54 Machinery gene
  J0W34_RS02335 lptB 500444..501166 (-) 723 WP_230970538.1 LPS export ABC transporter ATP-binding protein -
  J0W34_RS02340 recX 501153..501599 (-) 447 WP_227815412.1 recombination regulator RecX -
  J0W34_RS02345 recA 501610..502653 (-) 1044 WP_227815413.1 recombinase RecA Machinery gene
  J0W34_RS02350 - 502749..503234 (-) 486 WP_230970539.1 CinA family protein -
  J0W34_RS02355 - 503244..503729 (-) 486 WP_230970540.1 phosphatidylglycerophosphatase A -
  J0W34_RS02360 thiL 503759..504727 (-) 969 WP_230970541.1 thiamine-phosphate kinase -
  J0W34_RS02365 - 505102..506874 (+) 1773 WP_230970542.1 N-acetylglutaminylglutamine amidotransferase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37088.40 Da        Isoelectric Point: 4.9450

>NTDB_id=544998 J0W34_RS02345 WP_227815413.1 501610..502653(-) (recA) [Nitrogeniibacter aestuarii strain H1-1-2A]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDDNLARDIEAVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFVDAEHALDVGYAEKLGVNIDDLLVSQPDTGEQALEISDMLVRSGGIDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRIDIRRTGTIKKGDEVVGS
ETRCKVVKNKVAPPFKQANFDILYGEGISREGEIIDLGVEAKIVDKAGAWYSYNGTKIGQGKDNTREYLKANPAIAREIE
NKVRATFNLSAMAAIEAAAEPVESTEA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=544998 J0W34_RS02345 WP_227815413.1 501610..502653(-) (recA) [Nitrogeniibacter aestuarii strain H1-1-2A]
ATGGACGACAACAAGGCCAAAGCGCTCGCCGCCGCACTGTCGCAGATCGAAAAACAGTTTGGTAAAGGCTCGATCATGCG
CATGGGCGACGACAACCTCGCTCGCGACATCGAAGCCGTCTCGACCGGCTCGCTGGGCCTCGACATCGCGCTGGGCCTGG
GTGGCCTGCCCCGTGGACGCGTGGTCGAGATCTACGGCCCGGAATCGTCCGGTAAAACAACGCTGACGCTGCAAGTCATT
GCCGAGATGCAGAAACTCGGTGGCACGGCCGCCTTCGTGGATGCCGAGCACGCGCTGGATGTCGGCTACGCCGAGAAGCT
GGGTGTCAACATCGACGATCTGCTGGTCTCCCAGCCCGACACCGGCGAACAGGCGCTCGAGATTTCCGACATGCTGGTGC
GCTCCGGCGGCATCGACATCGTCGTGATCGACTCGGTGGCAGCCCTGACGCCAAAAGCCGAAATCGAAGGCGAAATGGGC
GACCAGCTGCCGGGCCTGCAGGCCCGCCTCATGAGTCAGGCCCTGCGCAAGCTCACCGCCAACATCAAGCGCACCAATAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAGACCACCACCGGCGGAAATG
CACTGAAGTTCTACTCGTCCGTGCGTATCGACATCCGCCGTACCGGCACCATCAAGAAGGGCGACGAGGTGGTCGGTTCC
GAAACCCGCTGCAAGGTCGTCAAGAACAAGGTGGCTCCTCCGTTCAAGCAGGCCAACTTCGACATCCTGTACGGTGAAGG
TATCTCCCGCGAGGGCGAAATCATCGATCTGGGCGTTGAGGCCAAGATCGTGGACAAGGCCGGCGCCTGGTATTCGTACA
ACGGCACAAAGATCGGTCAGGGCAAGGACAACACGCGCGAGTACCTGAAGGCCAACCCGGCCATCGCGCGTGAAATCGAA
AACAAGGTTCGCGCCACCTTCAACCTGTCGGCCATGGCCGCCATCGAGGCCGCTGCCGAACCGGTTGAATCGACCGAGGC
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

78.462

93.66

0.735
  recA Vibrio cholerae strain A1552

70.893

100

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.893

100

0.709
  recA Pseudomonas stutzeri DSM 10701

74.924

94.236

0.706
  recA Acinetobacter baumannii D1279779

70.64

99.135

0.7
  recA Neisseria gonorrhoeae MS11

74.154

93.66

0.695
  recA Neisseria gonorrhoeae MS11

74.154

93.66

0.695
  recA Neisseria gonorrhoeae strain FA1090

74.154

93.66

0.695
  recA Acinetobacter baylyi ADP1

73.765

93.372

0.689
  recA Glaesserella parasuis strain SC1401

68.249

97.118

0.663
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.854

94.524

0.622
  recA Helicobacter pylori strain NCTC11637

61.671

100

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.964

95.965

0.614
  recA Helicobacter pylori 26695

61.383

100

0.614
  recA Bacillus subtilis subsp. subtilis str. 168

64.438

94.813

0.611
  recA Latilactobacillus sakei subsp. sakei 23K

62.805

94.524

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.581

96.254

0.573
  recA Streptococcus mutans UA159

60.121

95.389

0.573
  recA Streptococcus mitis NCTC 12261

60.486

94.813

0.573
  recA Streptococcus pneumoniae Rx1

60.486

94.813

0.573
  recA Streptococcus pneumoniae D39

60.486

94.813

0.573
  recA Streptococcus pneumoniae R6

60.486

94.813

0.573
  recA Streptococcus pneumoniae TIGR4

60.486

94.813

0.573
  recA Streptococcus mitis SK321

60.182

94.813

0.571
  recA Streptococcus pyogenes NZ131

59.878

94.813

0.568
  recA Lactococcus lactis subsp. cremoris KW2

59.633

94.236

0.562